Table 6 LCS-TA results for predicted models of 5T5A structure in the sequence-dependent mode
From: LCS-TA to identify similar fragments in RNA 3D structures
Model | MCQ threshold | 5° | 10° | 15° | 20° | 25° | ≥30° | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LCS | MCQ | LCS | MCQ | LCS | MCQ | LCS | MCQ | LCS | MCQ | LCS | MCQ | ||
(a) Human category | |||||||||||||
Bujnicki_1 | 0 | n/a | 9 | 9.94° | 18 | 14.11° | 62 | 18.92° | 62 | 18.92° | 62 | 18.92° | |
Chen_1 | 0 | n/a | 4 | 9.49° | 16 | 14.62° | 25 | 19.85° | 62 | 22.88° | 62 | 22.88° | |
Das_1 | 5 | 4.91° | 17 | 9.26° | 22 | 14.24° | 46 | 19.87° | 62 | 21.41° | 62 | 21.41° | |
Ding_1 | 0 | n/a | 11 | 9.29° | 22 | 13.86° | 62 | 18.10° | 62 | 18.10° | 62 | 18.10° | |
Dokholyan_1 | 0 | n/a | 6 | 9.61° | 18 | 14.65° | 47 | 19.45° | 62 | 21.42° | 62 | 21.42° | |
RNAComposerH_1 | 0 | n/a | 18 | 9.91° | 46 | 14.98° | 62 | 18.04° | 62 | 18.04° | 62 | 18.04° | |
(b) Server category | |||||||||||||
3dRNA_1 | 0 | n/a | 0 | n/a | 6 | 14.63° | 15 | 19.38° | 27 | 24.21° | 40 | 28.16° | |
Lee_1 | 0 | n/a | 0 | n/a | 7 | 12.89° | 24 | 19.96° | 29 | 24.48° | 62 | 25.30° | |
RNAComposer_1 | 0 | n/a | 10 | 8.84° | 19 | 14.90° | 55 | 19.98° | 62 | 20.50° | 62 | 20.50° | |
RW3D_1 | 4 | 4.08° | 6 | 8.48° | 33 | 14.94° | 40 | 15.64° | 40 | 15.64° | 40 | 15.64° | |
simRNA_1 | 0 | n/a | 7 | 9.24° | 18 | 14.95° | 62 | 19.36° | 62 | 19.36° | 62 | 19.36° | |