Table 4 Human interactome comparison: running time and peak memory
From: SPRINT: ultrafast protein-protein interaction prediction of the entire human interactome
| Dataset | Program | Time (s) | Memory (GB) | ||||
|---|---|---|---|---|---|---|---|
| Preprocess | Train | Predict | Preprocess | Train | Predict | ||
| Biogrid | Martin | 32,400 | > 1,209,600 | – | 2.5 | 6.1 | – |
| PIPE2 | 312,120 | N/A | †1,150,675,200 | 2.1 | N/A | 18.9 | |
| Ding | 37,708 | – | – | 3.3 | > 256 | – | |
| SPRINT | 105,480 | N/A | 6,120 | 11.2 | N/A | 3.0 | |
| HPRD Release 9 | Martin | 32,400 | 584,640 | †107,222,400 | 2.5 | 3.2 | 1.5 |
| PIPE2 | 312,120 | N/A | †435,628,800 | 2.1 | N/A | 18.9 | |
| Ding | 37,708 | 236,551 | 374,360 | 3.3 | 79.5 | 79.5 | |
| SPRINT | 105,480 | N/A | 1,257 | 11.2 | N/A | 3.0 | |
| Innate experim. validated | Martin | 32,400 | > 1,209,600 | – | 2.5 | 5.7 | – |
| PIPE2 | 312,120 | N/A | †872,294,400 | 2.1 | N/A | 18.9 | |
| Ding | 37,708 | – | – | 3.3 | > 256 | – | |
| SPRINT | 105,480 | N/A | 3,600 | 11.2 | N/A | 3.0 | |
| Innate manually curated | Martin | 32,400 | 26,280 | †30,888,000 | 2.5 | 1.9 | 1.5 |
| PIPE2 | 312,120 | N/A | †230,342,400 | 2.1 | N/A | 18.9 | |
| Ding | 37,708 | 55,532 | 285,323 | 3.3 | 25.4 | 25.4 | |
| SPRINT | 105,480 | N/A | 930 | 11.2 | N/A | 3.0 | |
| IntAct | Martin | 32,400 | > 1,209,600 | – | 2.5 | 3.5 | – |
| PIPE2 | 312,120 | N/A | †616,464,000 | 2.1 | N/A | 18.9 | |
| Ding | 37,708 | > 1,209,600 | – | 3.3 | 220 | – | |
| SPRINT | 105,480 | N/A | 2,672 | 11.2 | N/A | 3.0 | |
| MINT | Martin | 32,400 | 101,160 | †52,557,120 | 2.5 | 2.3 | 1.5 |
| PIPE2 | 312,120 | N/A | †372,902,400 | 2.1 | N/A | 18.9 | |
| Ding | 37,708 | 120,720 | 331,865 | 3.3 | 41.1 | 41.1 | |
| SPRINT | 105,480 | N/A | 952 | 11.2 | N/A | 3.0 | |