Table 3 Ten predicted protein complexes with smallest P-values

2

1.21e-31

YCR035C, YDL111C, YDR280W, YGR095C

polyadenylation-dependent

12 out of 14

YHR069C, YHR081W, YNL189W, YNL232W

snoRNA 3’-end processing

genes, 85.7%

YOR001W, YOR076C, YGR158C, YGR195W

YOL021C, YOL142W

5

8.98e-31

YAL043C, YDR195W, YDR228C, YDR301W

mRNA polyadenylation

13 out of 17

YJL033W, YJR093C, YKL018W, YKL059C

genes, 76.5%

YLR277C, YMR061W, YNL317W, YOR179C

YKR002W, YLR115W, YER133W, YGR156W

YPR107C

7

5.85e-32

YBR146W, YBR251W, YDR036C, YDR041W

organellar small ribosomal

14 out of 15

YGL129C, YGR084C, YHL004W, YIL093C

subunit

genes, 93.3%

YNL137C, YNL306W, YPL118W, YDR347W

YJR113C, YKL155C, YDR337W

10

3.70-43

YBR217W, YBR272C, YDL007W, YDL097C

proteasome complex

20 out of 21

YDR427W, YEL037C, YER012W, YER021W

genes, 95.2%

YFR052W, YGL004C, YGL048C, YHL030W

YOR259C, YOR261C, YPR108W, YHR200W

YFR004W, YFR010W, YDL147W, YDR394W

YKL145W

13

1.65e-35

YBR119W, YDL087C, YDR235W, YDR240C

U1 snRNP

14 out of 16

YHR086W, YIL061C, YKL012W, YLR147C

genes, 87.5%

YML046W, YMR125W, YPL178W, YPR182W

YLR275W, YLR298C, YFL017W-A, YGR013W

18

4.7e-29

YBR254C, YDR108W, YDR246W, YDR407C

TRAPP complex

10 out of 11

YGR166W, YJL044C, YKR068C, YML077W

genes, 90.9%

YMR218C, YOR115C, YDR472W

27

7.34e-36

YBR055C, YBR152W, YDL098C, YDR473C

U4/U6 x U5 tri-snRNP

15 out of 15

YJR022W, YKL173W, YLR147C, YLR275W

complex

genes, 100%

YPR082C, YPR178W, YPR182W, YFL017W-A

YGR091W, YOR159C, YOR308C

35

2.05e-30

YBL084C, YDL008W, YDR118W, YFR036W

anaphase-promoting

11 out of 11

YHR166C, YKL022C, YLR102C, YLR127C

complex

genes, 100%

YNL172W, YOR249C, YGL240W

46

9.34e-32

YBL093C, YBR193C, YBR253W, YCR081W

transcription factor activity,

16 out of 17

YDR443C, YER022W, YGL025C, YGR104C

RNA polymerase II

genes, 94.1%

YNL236W, YNR010W, YOL051W, YOL135C

transcription factor

YHR041C, YHR058C, YDL005C, YDR308C

binding

YOR174W

399

2.77e-28

YBR127C, YDL185W, YEL051W, YGR020C

proton-transporting ATPase

11 out of 11

YKL080W, YLR447C, YMR054W, YOR270C

activity, rotational mechanism

genes, 100%

YOR332W, YPR036W, YHR039C-A