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Table 3 Basic statistics of Trinity transcripts using original Inchworm and MapReduce-Inchworm using the mouse RNA-seq data [22]

From: K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity

  original Inchworm MapReduce-Inchworm
Total trinity genes 55,498 55,047
Total trinity transcripts 80,825 78,719
Percent GC 49.4 49.46
Contig N10 6282 6163
Contig N20 4725 4621
Contig N30 3946 3831
Contig N40 3275 3183
Contig N50 2693 2630
Median contig length 551 558
Average contig 1284.53 1267.98
Total assembled bases 103,822,088 99,814,020
  1. The statistics were calculated using the perl script TrinityStats.pl, included in the original Trinity pipeline