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Fig. 4 | BMC Bioinformatics

Fig. 4

From: TRAVeLer: a tool for template-based RNA secondary structure visualization

Fig. 4

Multibranch modification (see Additional fileĀ 1 for color coding definition). a Multibranch modification without loop rebuild. On the left is part of frog (X04025) 18S rRNA template and on the right is the target (human 18S rRNA) visualization with the residues in the upper right part being squeezed to avoid re-layouting of the loop. b Multibranch modification with loop rebuild. On the left is part of shrimp (X04025) 18S rRNA template and on the right is the target (human 18S rRNA) visualization where the loop had to be rebuilt due to substantial difference of the target and template. The numbers representing the corresponding hairpins in the respective structures

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