Fig. 3From: Identification of streptococcal small RNAs that are putative targets of RNase III through bioinformatics analysis of RNA sequencing dataPipeline for RNA-seq analysis for intergenic region detection. Red boxes denote software used while the solid blue box is software developed in house. This pipeline details two separate pipelines for analyzing RNA-seq data focusing on intergenic regions with measureable expression. Both pipelines were used to create a final prospective list, also denoted in this workflowBack to article page