Identification of streptococcal small RNAs that are putative targets of RNase III through bioinformatics analysis of RNA sequencing data

Table 1 Detected IGRs with potential for sRNA expression and their confirmation

TSS#^a	Fold Change (ΔRNase III/HSC5)	p-Value	Visual Confirmation using Bamview	Predicted Rho-independent Terminator	sRNA Potential
59	−2.81	5.00E-05	Negative	Yes	Unlikely
72	4.42	5.00E-05	Negative	No	Highly Unlikely
241	2.77	0.0216	Negative	No	Highly Unlikely
231	2.48	0.00095	Negative	Yes	Likely
627	2.22	0.00465	Negative	No	Highly Unlikely
53	2.26	0.0436	Negative	Yes	Unlikely
333	2.37	0.00135	Positive	No	Likely
516	2.24	0.02875	Positive	No	Likely
332	2.29	5.00E-05	Positive	Yes	Highly Likely
795	2.33	0.02665	Positive	No	Likely
181	2.05	0.0059	Positive	No	Likely
520	2.10	0.0405	Positive	Yes	Highly Likely

ISSN: 1471-2105