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Table 1 The number of identified nodes and the number of annotated nodes are summarized for different network querying algorithms and different query/target network pairs

From: CUFID-query: accurate network querying through random walk based network flow estimation

  Human/mouse Human/yeast
  Annotated Identified % Annotated Annotated Identified % Annotated
NatalieQ 1233 2454 0.502 1382 1753 0.788
Corbi 1357 2493 0.544 1305 1693 0.771
HubAlign 1343 2544 0.528 1692 2461 0.688
RESQUE-C 2019 4530 0.446 2735 3773 0.725
RESQUE-M 1395 2553 0.546 1669 2317 0.720
SEQUOIA 1799 3767 0.478 2807 3842 0.731
CUFID-query 1548 2946 0.525 2234 2969 0.752
  Mouse/human Mouse/yeast
  Annotated Identified % Annotated Annotated Identified % Annotated
NatalieQ 223 366 0.609 161 193 0.834
Corbi 229 355 0.645 157 193 0.813
HubAlign 245 372 0.659 206 329 0.626
RESQUE-C 383 712 0.538 368 499 0.737
RESQUE-M 246 372 0.661 227 290 0.783
SEQUOIA 296 542 0.546 336 491 0.684
CUFID-query 277 447 0.620 274 397 0.690
  Yeast/human Yeast/mouse
  Annotated Identified % Annotated Annotated Identified % Annotated
NatalieQ 767 1250 0.614 394 1223 0.322
Corbi 790 1230 0.642 424 1246 0.340
HubAlign 1003 1654 0.606 571 1683 0.339
RESQUE-C 1265 2490 0.508 772 2488 0.310
RESQUE-M 881 1574 0.560 543 1571 0.346
SEQUOIA 1171 2234 0.524 704 2337 0.301
CUFID-query 942 1507 0.625 531 1541 0.345
  Overall
  Annotated Identified % Annotated
NatalieQ 4160 7239 0.575
Corbi 4262 7210 0.591
HubAlign 5060 9043 0.560
RESQUE-C 7542 14,492 0.520
RESQUE-M 4961 8677 0.572
SEQUOIA 7113 13,213 0.538
CUFID-query 5806 9807 0.592