TY - JOUR AU - An, L. AU - Fitzpatrick, D. AU - Harrison, P. M. PY - 2016 DA - 2016// TI - Emergence and evolution of yeast prion and prion-like proteins JO - BMC Evol Biol VL - 16 UR - https://doi.org/10.1186/s12862-016-0594-3 DO - 10.1186/s12862-016-0594-3 ID - An2016 ER - TY - JOUR AU - An, L. AU - Harrison, P. M. PY - 2016 DA - 2016// TI - The evolutionary scope and neurological disease linkage of yeast-prion-like proteins in humans JO - Biol Direct VL - 11 UR - https://doi.org/10.1186/s13062-016-0134-5 DO - 10.1186/s13062-016-0134-5 ID - An2016 ER - TY - JOUR AU - Harbi, D. AU - Kumar, M. AU - Harrison, P. M. PY - 2011 DA - 2011// TI - LPS-annotate: complete annotation of compositionally biased regions in the protein knowledgebase JO - Database (Oxford) VL - 2011 UR - https://doi.org/10.1093/database/baq031 DO - 10.1093/database/baq031 ID - Harbi2011 ER - TY - JOUR AU - Wootton, J. C. AU - Federhen, S. PY - 1996 DA - 1996// TI - Analysis of compositionally biased regions in sequence databases JO - Methods Enzymol VL - 266 UR - https://doi.org/10.1016/S0076-6879(96)66035-2 DO - 10.1016/S0076-6879(96)66035-2 ID - Wootton1996 ER - TY - JOUR AU - Promponas, V. J. AU - Enright, A. J. AU - Tsoka, S. AU - Kreil, D. P. AU - Leroy, C. AU - Hamodrakas, S. AU - Sander, C. AU - Ouzounis, C. A. PY - 2000 DA - 2000// TI - CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts JO - Bioinformatics VL - 16 UR - https://doi.org/10.1093/bioinformatics/16.10.915 DO - 10.1093/bioinformatics/16.10.915 ID - Promponas2000 ER - TY - JOUR AU - Harrison, P. M. PY - 2006 DA - 2006// TI - Exhaustive assignment of compositional bias reveals universally prevalent biased regions: analysis of functional associations in human and drosophila JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-441 DO - 10.1186/1471-2105-7-441 ID - Harrison2006 ER - TY - JOUR AU - Harrison, P. M. AU - Gerstein, M. PY - 2003 DA - 2003// TI - A method to assess compositional bias in biological sequences and its application to prion-like glutamine/asparagine-rich domains in eukaryotic proteomes JO - Genome Biol VL - 4 UR - https://doi.org/10.1186/gb-2003-4-6-r40 DO - 10.1186/gb-2003-4-6-r40 ID - Harrison2003 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schaffer, A. A. AU - Zhang, J. AU - Zhang, Z. AU - Miller, W. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER - TY - JOUR AU - Harrison, L. B. AU - Yu, Z. AU - Stajich, J. E. AU - Dietrich, F. S. AU - Harrison, P. M. PY - 2007 DA - 2007// TI - Evolution of budding yeast prion-determinant sequences across diverse fungi JO - J Mol Biol VL - 368 UR - https://doi.org/10.1016/j.jmb.2007.01.070 DO - 10.1016/j.jmb.2007.01.070 ID - Harrison2007 ER - TY - JOUR AU - Chandonia, J. M. AU - Hon, G. AU - Walker, N. S. AU - Lo Conte, L. AU - Koehl, P. AU - Levitt, M. AU - Brenner, S. E. PY - 2004 DA - 2004// TI - The ASTRAL compendium in 2004 JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh034 DO - 10.1093/nar/gkh034 ID - Chandonia2004 ER - TY - JOUR AU - Boeckmann, B. AU - Bairoch, A. AU - Apweiler, R. AU - Blatter, M. C. AU - Estreicher, A. AU - Gasteiger, E. AU - Martin, M. J. AU - Michoud, K. AU - O'Donovan, C. AU - Phan, I. PY - 2003 DA - 2003// TI - The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg095 DO - 10.1093/nar/gkg095 ID - Boeckmann2003 ER - TY - STD TI - Harbi D, Harrison PM. Classifying prion and prion-like phenomena. Prion. 2014;8(2):161-5. ID - ref12 ER - TY - JOUR AU - Glover, J. R. AU - Kowal, A. S. AU - Schirmer, E. C. AU - Patino, M. M. AU - Liu, J. J. AU - Lindquist, S. PY - 1997 DA - 1997// TI - Self-seeded fibers formed by Sup35, the protein determinant of [PSI+], a heritable prion-like factor of S. Cerevisiae JO - Cell VL - 89 UR - https://doi.org/10.1016/S0092-8674(00)80264-0 DO - 10.1016/S0092-8674(00)80264-0 ID - Glover1997 ER - TY - JOUR AU - Liu, J. J. AU - Sondheimer, N. AU - Lindquist, S. L. PY - 2002 DA - 2002// TI - Changes in the middle region of Sup35 profoundly alter the nature of epigenetic inheritance for the yeast prion [PSI+] JO - Proc Natl Acad Sci U S A VL - 99 UR - https://doi.org/10.1073/pnas.252652099 DO - 10.1073/pnas.252652099 ID - Liu2002 ER - TY - JOUR AU - Du, Z. AU - Crow, E. T. AU - Kang, H. S. AU - Li, L. PY - 2010 DA - 2010// TI - Distinct subregions of Swi1 manifest striking differences in prion transmission and SWI/SNF function JO - Mol Cell Biol VL - 30 UR - https://doi.org/10.1128/MCB.00225-10 DO - 10.1128/MCB.00225-10 ID - Du2010 ER - TY - STD TI - Valtierra S, Du Z, Li L. Analysis of small critical regions of Swi1 conferring prion formation, maintenance, and transmission. Mol Cell Biol. 2017; ID - ref16 ER - TY - JOUR AU - Dosztanyi, Z. AU - Csizmok, V. AU - Tompa, P. AU - Simon, I. PY - 2005 DA - 2005// TI - IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti541 DO - 10.1093/bioinformatics/bti541 ID - Dosztanyi2005 ER - TY - JOUR AU - Patel, B. K. AU - Gavin-Smyth, J. AU - Liebman, S. W. PY - 2009 DA - 2009// TI - The yeast global transcriptional co-repressor protein Cyc8 can propagate as a prion JO - Nat Cell Biol VL - 11 UR - https://doi.org/10.1038/ncb1843 DO - 10.1038/ncb1843 ID - Patel2009 ER - TY - JOUR AU - Stein, K. C. AU - True, H. L. PY - 2011 DA - 2011// TI - The [RNQ+] prion: a model of both functional and pathological amyloid JO - Prion VL - 5 UR - https://doi.org/10.4161/pri.18213 DO - 10.4161/pri.18213 ID - Stein2011 ER -