Fig. 3
From: fLPS: Fast discovery of compositional biases for the protein universe
Timing: All three of the protein data sets analyzed here were downloaded from the UniProt website in August 2016 [11]. The programs were all run on an Intel Xeon CPU e5–1650 v2 @3.5GHz in an Apple Mac Pro that has 32GB of RAM and has installed in it MacOSX version 10.12.6. The program fLPS was tested for different maximum window size (M) values, and all other parameters set to defaults (dark grey bars). The CPU time in seconds is the sum of the user time and system time. For tests on the yeast (Saccharomyces cerevisiae) proteome (5782 sequences) and SwissProt (551,705 sequences) the time depicted is the mean from ten runs. For TrEMBL (65,378,749 sequences), the time for just one run is shown. Timings for SEG (light grey bars, default parameter values, and two other recommended parameter sets except for the TrEMBL run) are provided for comparison [4]