Implementation | BugMat | FindNeighbour1 | FindNeighbour2 |
---|---|---|---|
Presentation | Command Line | Server application | Server application |
Technology | In-memory matrix | In-memory matrix | In-memory reference based sequences |
Can add samples | No | Yes | Yes |
Role in production environment | Remove invariant sites before maximal likelihood tree generation | Store pairwise distances between samples | Store significant pairwise distances between samples |
Stores all pairwise distances | Yes | Yes | No (customisable) |
Uses database for sequence metadata storage | No | Yes | Yes |
Uses database for pairwise distance storage | No | No | Yes |
Requires reference sequence specified | No | No | Yes |
Implementation | C++ | Python, C++ | Python |