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Table 1 Comparison of production of methylation counts with Bismark and DMRfinder

From: DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data

  Bismark DMRfinder
Run-time (sec) 22,514 9,378
Disk usage (Gb) 172.51 0.89
  1. The Bismark scripts ‘bismark_methylation_extractor’ and ‘coverage2cytosine’ and the DMRfinder script ‘’ were used to analyze the 335.2 million aligned reads of the Lister et al. [9] IMR90 replicate 1a samples