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Table 2 Clusters formed by DMRfinder and BiSeq in analyzing the Lister et al. [9] IMR90 samples

From: DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data

 

Number of clusters

Total length (Mbp)

Average length (bp)

DMRfinder (default)

522,963

46.0

88.0

DMRfinder (−r 1 -m 1 -x 1e9 -c 5)

795,637

168.7

212.1

BiSeq

795,637

168.7

212.1

  1. DMRfinder was run using default parameters and an alternative set of parameters matching BiSeq’s clustering approach