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Table 3 Comparison of run-times (sec) to analyze the Lister et al. [9] IMR90 samples, which had methylation counts at 21-25 million CpG sites

From: DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data

  bsseq BiSeq DSS DMRfinder
Clustering 17,367 556
Smoothing 18,151 563,738
Finding DMRs 187 297,501a 7,400 552
  1. abetaRegression() step only