Table 3 Comparison of run-times (sec) to analyze the Lister et al. [9] IMR90 samples, which had methylation counts at 21-25 million CpG sites
From: DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data
| bsseq | BiSeq | DSS | DMRfinder | |
|---|---|---|---|---|
| Clustering | – | 17,367 | – | 556 |
| Smoothing | 18,151 | 563,738 | – | – |
| Finding DMRs | 187 | 297,501a | 7,400 | 552 |