Swellix: a computational tool to explore RNA conformational space

BMC Bioinformatics

Table 2 Effect of Helix Constraints on Bundling of a 76-mer tRNA

Minimum Helix Length	Components	Bundles	Structures	Runtime (s)
2	495	107	1,327,023,534	6875.18
3	215	56	563,026	8.06
4	91	28	8292	5.5
5	36	11	314	21.02
6	13	5	33	293.08

Swellix computations were run with the parallelized bundling option on the Blue Waters computer. The sequence is the 1EHZ tRNA

ISSN: 1471-2105