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Table 2 Effect of Helix Constraints on Bundling of a 76-mer tRNA

From: Swellix: a computational tool to explore RNA conformational space

Minimum Helix Length Components Bundles Structures Runtime (s)
2 495 107 1,327,023,534 6875.18
3 215 56 563,026 8.06
4 91 28 8292 5.5
5 36 11 314 21.02
6 13 5 33 293.08
  1. Swellix computations were run with the parallelized bundling option on the Blue Waters computer. The sequence is the 1EHZ tRNA
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BMC Bioinformatics

ISSN: 1471-2105

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