Skip to main content

Table 3 Swellix Computations of Longer RNA Sequences

From: Swellix: a computational tool to explore RNA conformational space

Sequence Minimum Helix Length Nucleotides Components Bundles Structures Runtime (s)
MicA 5 50 9 9 22 27.45
tRNA asp 7 5 71 31 14 271 43.61
tRNA RG1600 5 74 22 12 254 14.51
tRNA 1EHZ 5 76 36 11 314 21.02
GA1 pRNA 5 161 154 26 417,535 29.43
SF5 pRNA 5 167 206 31 2,679,059 54.09
M2 pRNA 5 171 185 31 2,988,931 60.79
phi29 pRNA 5 174 270 57 47,596,862 200.28
Azoarcus gr. I intron 5 197 173 32 3,020,337 30.11
Tetrahymena gr. I intron 5 247 247 35 105,405,879 285.49
  1. Swellix computations were run with the parallelized bundling option on the Blue Waters computer. The sequences are those in Table 1 as well as 4 prohead RNA sequences [44] and 2 group I intron sequences [45]