Fig. 4
From: Detecting intermediate protein conformations using algebraic topology
The projection of the clusters for (a-b) Calmodulin (1CLL →1CTR) (c-d) AdK (1AKE →4AKE) (e-f) GroEL (1SS8 →1SX4) The left plot shows the hierarchical clustering and the right plot shows the clusters generated by k-means. In each case the Isomap projection along the first three reaction coordinates is used. Every cluster is depicted in a different color