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Table 2 Spherical-PCA cluster analysis for Calmodulin, AdK and GroEL

From: Detecting intermediate protein conformations using algebraic topology

Cluster No.

Size

RMSD (1CLL)

RMSD (1CTR)

1

14

14.63±0.3

2.04±0.4

2

8

13.28±0.4

4.40±0.4

3

6

11.89±0.5

5.60±0.3

4

13

9.55±1.0

7.45±0.6

5

41

2.73±1.4

12.96±1.2

Cluster No.

Size

RMSD (1AKE)

RMSD (4AKE)

1

26

6.28±0.3

2.41±0.5

2

47

2.56±1.4

5.55±1.2

3

5

2.36±0.2

6.00±0.1

Cluster No.

Size

RMSD (1SX4)

RMSD (1SS8)

1

25

11.42±0.3

3.17±0.8

2

14

10.20±0.4

5.31±0.5

3

39

3.74±1.4

10.24±1.2

  1. The RMSD is measured similar to Table 1