Table 2 Quality of the reconciled/merged scaffold assemblies constructed by GAM-NGS, Metassembler, and CAMSA from the scaffold assemblies produced by ScaffMatch, SOAPdenovo2, SGA, and SSPACE on three GAGE datasets
From: CAMSA: a tool for comparative analysis and merging of scaffold assemblies
| Â | # contigs | # miss. | # local miss. | NA50 | NA75 |
|---|---|---|---|---|---|
S. aureus | Â | ||||
  GAM-NGS | 6 | 0 | 6 | 1082860 | 1082860 |
  Metassembler | 6 | 0 | 3 | 1083010 | 1083010 |
  CAMSA | 6 | 0 | 3 | 1083448 | 1083448 |
  CAMSA(+GM) | 6 | 0 | 2 | 1083436 | 1083436 |
R. sphaeroides | Â | ||||
  GAM-NGS | 16 | 6 | 17 | 3080645 | 3080645 |
  Metassembler | 9 | 6 | 17 | 3080845 | 3080845 |
  CAMSA | 9 | 6 | 9 | 2965313 | 2965313 |
  CAMSA(+GM) | 10 | 6 | 9 | 2964450 | 2964450 |
H. sapiens Chr14 | Â | ||||
  GAM-NGS | 128 | 83 | 543 | 2941846 | 1235019 |
  Metassembler | 93 | 94 | 528 | 2494911 | 1235460 |
  CAMSA | 109 | 91 | 485 | 2624904 | 1235471 |
  CAMSA(+GM) | 94 | 84 | 511 | 2979834 | 1235464 |