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Table 3 Selected parameters

From: RocSampler: regularizing overlapping protein complexes in protein-protein interaction networks

 

Parameters

Value

MCL

Inflation

3.4

SPICi

Density, support, graph

0.1, 0.5, 0

ClusterONE

Density

0.2

NWE

Restart, cutoff, overlap

0.4, 0.3, 0.3

PPSampler2

Size dist coef, scaling exp,

500, 3,

 

Protein num coef, λ

106, 2000

RocSampler

c c l u−d i s , β, c c l u−s i z e ,c hy ,

110, 0.2, 500, 10,

 

c p r o−n u m ,

5×10−5