Table 4 Selected parameters for the Collins, Gavin, Krogan core, and Krogan extended PPI datasets
From: RocSampler: regularizing overlapping protein complexes in protein-protein interaction networks
| Â | Collins | Gavin | Krogan core | Krogan extended |
|---|---|---|---|---|
MCL | 2.1 | 2.5 | 2.4 | 1.6 |
SPICi | 0.1, 0.5, 0 | 0.4, 0.4, 0 | 0.6, 0.3, 0 | 0.6, 0.4, 0 |
ClusterONE | 0.7 | 0.4 | 0.6 | 0.7 |
NWE | 0.4, 0.3, 0.1 | 0.4, 0.3, 0.2 | 0.4, 0.3, 0.4 | 0.4, 0.7, 0.1 |
PPSampler2 | 1500, 3, 107, 1000 | 500, 2.5, 105, 1000 | 1000, 2, 107, 1000 | 1500, 3, 107, 1000 |
RocSampler | 90, 0.3 300, 5, | 170, 0.2, 200, 20, | 170, 0.3, 500, 15, | 150, 0.3, 200, 15, |
|  | 1.5×10−4 | 10−4 | 1.5×10−4 | 1.5×10−4 |