Table 2 List of 98 expressed genes obtained with limma as the intersection of microarray, RNA-Seq and integrated dataset
From: Integration of RNA-Seq data with heterogeneous microarray data for breast cancer profiling
Genes names | ∣l o g F C∣≥2 | t | p-val | adj.p.val | B |
|---|---|---|---|---|---|
KRT19 | 7.993 | 11.072 | 8.124E-21 | 2.449E-19 | 36.607 |
KRT6A | -7.800 | -13.558 | 3.347E-27 | 2.503E-25 | 51.214 |
NNMT | -7.584 | -11.544 | 4.951E-22 | 1.780E-20 | 39.384 |
VIM | -7.261 | -15.117 | 3.917E-31 | 5.046E-29 | 60.213 |
AKR1B1 | -6.943 | -11.437 | 9.357E-22 | 3.265E-20 | 38.753 |
SFRP1 | -6.866 | -18.820 | 4.925E-40 | 1.904E-37 | 80.570 |
TGFBI | -6.701 | -14.299 | 4.424E-29 | 4.174E-27 | 55.515 |
MT1E | -6.650 | -15.281 | 1.537E-31 | 2.079E-29 | 61.142 |
C3 | -6.569 | -15.928 | 3.857E-33 | 6.589E-31 | 64.805 |
BMP7 | 6.406 | 13.058 | 6.330E-26 | 3.910E-24 | 48.292 |
KRT5 | -6.229 | -9.125 | 7.460E-16 | 1.062E-14 | 25.273 |
CXCL1 | -6.145 | -13.526 | 4.030E-27 | 2.986E-25 | 51.030 |
S100A2 | -6.016 | -9.582 | 5.249E-17 | 9.014E-16 | 27.902 |
KRT7 | -5.991 | -11.975 | 3.850E-23 | 1.643E-21 | 41.922 |
TNS4 | -5.866 | -25.125 | 1.651E-53 | 3.829E-50 | 111.284 |
EEF1A2 | 5.764 | 8.956 | 1.979E-15 | 2.656E-14 | 24.307 |
CLMP | -5.631 | -11.238 | 3.037E-21 | 9.781E-20 | 37.583 |
IFI16 | -5.543 | -9.230 | 4.073E-16 | 6.036E-15 | 25.872 |
LAMC2 | -5.426 | -12.346 | 4.247E-24 | 2.015E-22 | 44.112 |
IGFBP4 | 5.412 | 13.779 | 9.173E-28 | 7.406E-26 | 52.501 |
FAM83A | -5.328 | -14.042 | 1.974E-28 | 1.741E-26 | 54.028 |
SYTL2 | 5.283 | 11.883 | 6.617E-23 | 2.725E-21 | 41.384 |
SNAI2 | -5.169 | -9.731 | 2.204E-17 | 4.010E-16 | 28.762 |
DNER | -5.152 | -11.859 | 7.620E-23 | 3.114E-21 | 41.244 |
PRKCDBP | -5.105 | -10.241 | 1.105E-18 | 2.434E-17 | 31.730 |
ALOX15B | -5.088 | -16.524 | 1.353E-34 | 2.896E-32 | 68.133 |
IGFBP5 | 5.085 | 8.165 | 1.755E-13 | 1.735E-12 | 19.871 |
BNC1 | -5.072 | -16.335 | 3.889E-34 | 7.697E-32 | 67.085 |
GFRA1 | 5.021 | 6.872 | 1.958E-10 | 1.223E-09 | 12.955 |
DSC3 | -4.999 | -17.145 | 4.296E-36 | 1.181E-33 | 71.561 |
PTGES | -4.990 | -17.489 | 6.479E-37 | 1.947E-34 | 73.440 |
TFF1 | 4.925 | 4.857 | 3.168E-06 | 1.023E-05 | 3.497 |
RAB25 | 4.864 | 8.521 | 2.368E-14 | 2.683E-13 | 21.851 |
KRT14 | -4.863 | -6.445 | 1.768E-09 | 9.652E-09 | 10.794 |
EFEMP1 | -4.855 | -10.020 | 4.059E-18 | 8.275E-17 | 30.440 |
SLPI | -4.793 | -10.194 | 1.455E-18 | 3.128E-17 | 31.457 |
SDPR | -4.728 | -12.002 | 3.264E-23 | 1.401E-21 | 42.086 |
FBP1 | 4.707 | 6.789 | 3.017E-10 | 1.848E-09 | 12.530 |
EPCAM | 4.662 | 8.150 | 1.906E-13 | 1.878E-12 | 19.790 |
GNA15 | -4.570 | -15.676 | 1.614E-32 | 2.495E-30 | 63.382 |
HTRA1 | -4.527 | -10.906 | 2.178E-20 | 6.152E-19 | 35.627 |
RAC2 | -4.524 | -11.727 | 1.669E-22 | 6.433E-21 | 40.465 |
CLCA2 | -4.411 | -9.272 | 3.189E-16 | 4.828E-15 | 26.115 |
GPX1 | -4.384 | -6.773 | 3.281E-10 | 1.994E-09 | 12.448 |
EMP3 | -4.383 | -9.299 | 2.728E-16 | 4.176E-15 | 26.269 |
SERPINB5 | -4.371 | -8.314 | 7.600E-14 | 8.016E-13 | 20.698 |
TSPYL5 | 4.317 | 6.297 | 3.735E-09 | 1.943E-08 | 10.062 |
GSTP1 | -4.242 | -5.846 | 3.433E-08 | 1.523E-07 | 7.892 |
SLC2A10 | 4.216 | 11.411 | 1.088E-21 | 3.782E-20 | 38.602 |
LDHB | -4.182 | -5.892 | 2.745E-08 | 1.238E-07 | 8.111 |
VSTM2L | -4.146 | -11.277 | 2.409E-21 | 7.852E-20 | 37.813 |
BIRC3 | -4.079 | -13.064 | 6.110E-26 | 3.799E-24 | 48.327 |
ABLIM3 | -4.000 | -12.337 | 4.481E-24 | 2.113E-22 | 44.059 |
TFCP2L1 | -3.874 | -11.847 | 8.202E-23 | 3.344E-21 | 41.171 |
DSG3 | -3.820 | -8.387 | 5.035E-14 | 5.469E-13 | 21.105 |
SLC26A2 | -3.798 | -13.491 | 4.947E-27 | 3.632E-25 | 50.826 |
C3orf14 | 3.763 | 7.772 | 1.558E-12 | 1.358E-11 | 17.715 |
IL20RB | -3.667 | -8.868 | 3.262E-15 | 4.229E-14 | 23.812 |
FXYD5 | -3.623 | -5.585 | 1.191E-07 | 4.882E-07 | 6.679 |
GSTM3 | 3.590 | 9.622 | 4.161E-17 | 7.268E-16 | 28.133 |
ADRB2 | -3.572 | -9.968 | 5.512E-18 | 1.099E-16 | 30.136 |
EMP1 | -3.535 | -7.622 | 3.543E-12 | 2.907E-11 | 16.905 |
IGFBP7 | -3.530 | -4.676 | 6.866E-06 | 2.104E-05 | 2.751 |
GJB5 | -3.517 | -12.456 | 2.225E-24 | 1.097E-22 | 44.755 |
HENMT1 | 3.514 | 7.953 | 5.732E-13 | 5.316E-12 | 18.702 |
ZBED2 | -3.507 | -6.452 | 1.705E-09 | 9.338E-09 | 10.830 |
MSLN | -3.504 | -8.558 | 1.917E-14 | 2.217E-13 | 22.061 |
IL18 | -3.415 | -9.270 | 3.223E-16 | 4.864E-15 | 26.104 |
TRIM29 | -3.395 | -9.588 | 5.081E-17 | 8.735E-16 | 27.934 |
OSR2 | 3.346 | 8.380 | 5.238E-14 | 5.671E-13 | 21.066 |
LAMB1 | -3.346 | -6.972 | 1.162E-10 | 7.510E-10 | 13.468 |
UCP2 | 3.332 | 5.788 | 4.539E-08 | 1.979E-07 | 7.620 |
CPVL | -3.331 | -7.870 | 9.043E-13 | 8.152E-12 | 18.253 |
KRT81 | -3.320 | -5.133 | 9.424E-07 | 3.334E-06 | 4.670 |
S100A8 | -3.292 | -5.698 | 6.982E-08 | 2.957E-07 | 7.200 |
TP53I3 | -3.242 | -11.149 | 5.160E-21 | 1.589E-19 | 37.057 |
FOXA1 | 3.226 | 5.576 | 1.241E-07 | 5.069E-07 | 6.640 |
SLC24A3 | 3.211 | 6.190 | 6.356E-09 | 3.184E-08 | 9.541 |
PNLIPRP3 | -3.200 | -7.998 | 4.470E-13 | 4.207E-12 | 18.948 |
INHBB | 3.180 | 7.756 | 1.698E-12 | 1.468E-11 | 17.630 |
RAB38 | -3.129 | -9.539 | 6.781E-17 | 1.137E-15 | 27.649 |
ZBTB16 | -3.112 | -8.869 | 3.251E-15 | 4.217E-14 | 23.816 |
PLD5 | -3.070 | -11.039 | 9.925E-21 | 2.960E-19 | 36.408 |
DFNA5 | -3.047 | -7.565 | 4.835E-12 | 3.890E-11 | 16.599 |
FKBP5 | -2.988 | -10.435 | 3.528E-19 | 8.458E-18 | 32.863 |
CD109 | -2.986 | -7.196 | 3.541E-11 | 2.475E-10 | 14.637 |
CASP1 | -2.955 | -6.388 | 2.367E-09 | 1.267E-08 | 10.509 |
SULT1E1 | -2.903 | -7.749 | 1.763E-12 | 1.513E-11 | 17.594 |
FAM174B | 2.779 | 5.557 | 1.353E-07 | 5.493E-07 | 6.555 |
PDZK1IP1 | -2.752 | -7.028 | 8.611E-11 | 5.667E-10 | 13.743 |
TNNI2 | -2.750 | -7.896 | 7.842E-13 | 7.133E-12 | 18.393 |
CAV1 | -2.727 | -5.028 | 1.503E-06 | 5.131E-06 | 4.217 |
IRX4 | -2.714 | -7.628 | 3.433E-12 | 2.825E-11 | 16.936 |
KRT80 | 2.706 | 5.268 | 5.131E-07 | 1.895E-06 | 5.259 |
FOXO1 | -2.649 | -8.921 | 2.408E-15 | 3.188E-14 | 24.113 |
SNCA | -2.635 | -8.533 | 2.211E-14 | 2.526E-13 | 21.919 |
TBL1X | 2.565 | 9.676 | 3.043E-17 | 5.434E-16 | 28.442 |