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Table 2 List of 98 expressed genes obtained with limma as the intersection of microarray, RNA-Seq and integrated dataset

From: Integration of RNA-Seq data with heterogeneous microarray data for breast cancer profiling

Genes names l o g F C≥2 t p-val adj.p.val B
KRT19 7.993 11.072 8.124E-21 2.449E-19 36.607
KRT6A -7.800 -13.558 3.347E-27 2.503E-25 51.214
NNMT -7.584 -11.544 4.951E-22 1.780E-20 39.384
VIM -7.261 -15.117 3.917E-31 5.046E-29 60.213
AKR1B1 -6.943 -11.437 9.357E-22 3.265E-20 38.753
SFRP1 -6.866 -18.820 4.925E-40 1.904E-37 80.570
TGFBI -6.701 -14.299 4.424E-29 4.174E-27 55.515
MT1E -6.650 -15.281 1.537E-31 2.079E-29 61.142
C3 -6.569 -15.928 3.857E-33 6.589E-31 64.805
BMP7 6.406 13.058 6.330E-26 3.910E-24 48.292
KRT5 -6.229 -9.125 7.460E-16 1.062E-14 25.273
CXCL1 -6.145 -13.526 4.030E-27 2.986E-25 51.030
S100A2 -6.016 -9.582 5.249E-17 9.014E-16 27.902
KRT7 -5.991 -11.975 3.850E-23 1.643E-21 41.922
TNS4 -5.866 -25.125 1.651E-53 3.829E-50 111.284
EEF1A2 5.764 8.956 1.979E-15 2.656E-14 24.307
CLMP -5.631 -11.238 3.037E-21 9.781E-20 37.583
IFI16 -5.543 -9.230 4.073E-16 6.036E-15 25.872
LAMC2 -5.426 -12.346 4.247E-24 2.015E-22 44.112
IGFBP4 5.412 13.779 9.173E-28 7.406E-26 52.501
FAM83A -5.328 -14.042 1.974E-28 1.741E-26 54.028
SYTL2 5.283 11.883 6.617E-23 2.725E-21 41.384
SNAI2 -5.169 -9.731 2.204E-17 4.010E-16 28.762
DNER -5.152 -11.859 7.620E-23 3.114E-21 41.244
PRKCDBP -5.105 -10.241 1.105E-18 2.434E-17 31.730
ALOX15B -5.088 -16.524 1.353E-34 2.896E-32 68.133
IGFBP5 5.085 8.165 1.755E-13 1.735E-12 19.871
BNC1 -5.072 -16.335 3.889E-34 7.697E-32 67.085
GFRA1 5.021 6.872 1.958E-10 1.223E-09 12.955
DSC3 -4.999 -17.145 4.296E-36 1.181E-33 71.561
PTGES -4.990 -17.489 6.479E-37 1.947E-34 73.440
TFF1 4.925 4.857 3.168E-06 1.023E-05 3.497
RAB25 4.864 8.521 2.368E-14 2.683E-13 21.851
KRT14 -4.863 -6.445 1.768E-09 9.652E-09 10.794
EFEMP1 -4.855 -10.020 4.059E-18 8.275E-17 30.440
SLPI -4.793 -10.194 1.455E-18 3.128E-17 31.457
SDPR -4.728 -12.002 3.264E-23 1.401E-21 42.086
FBP1 4.707 6.789 3.017E-10 1.848E-09 12.530
EPCAM 4.662 8.150 1.906E-13 1.878E-12 19.790
GNA15 -4.570 -15.676 1.614E-32 2.495E-30 63.382
HTRA1 -4.527 -10.906 2.178E-20 6.152E-19 35.627
RAC2 -4.524 -11.727 1.669E-22 6.433E-21 40.465
CLCA2 -4.411 -9.272 3.189E-16 4.828E-15 26.115
GPX1 -4.384 -6.773 3.281E-10 1.994E-09 12.448
EMP3 -4.383 -9.299 2.728E-16 4.176E-15 26.269
SERPINB5 -4.371 -8.314 7.600E-14 8.016E-13 20.698
TSPYL5 4.317 6.297 3.735E-09 1.943E-08 10.062
GSTP1 -4.242 -5.846 3.433E-08 1.523E-07 7.892
SLC2A10 4.216 11.411 1.088E-21 3.782E-20 38.602
LDHB -4.182 -5.892 2.745E-08 1.238E-07 8.111
VSTM2L -4.146 -11.277 2.409E-21 7.852E-20 37.813
BIRC3 -4.079 -13.064 6.110E-26 3.799E-24 48.327
ABLIM3 -4.000 -12.337 4.481E-24 2.113E-22 44.059
TFCP2L1 -3.874 -11.847 8.202E-23 3.344E-21 41.171
DSG3 -3.820 -8.387 5.035E-14 5.469E-13 21.105
SLC26A2 -3.798 -13.491 4.947E-27 3.632E-25 50.826
C3orf14 3.763 7.772 1.558E-12 1.358E-11 17.715
IL20RB -3.667 -8.868 3.262E-15 4.229E-14 23.812
FXYD5 -3.623 -5.585 1.191E-07 4.882E-07 6.679
GSTM3 3.590 9.622 4.161E-17 7.268E-16 28.133
ADRB2 -3.572 -9.968 5.512E-18 1.099E-16 30.136
EMP1 -3.535 -7.622 3.543E-12 2.907E-11 16.905
IGFBP7 -3.530 -4.676 6.866E-06 2.104E-05 2.751
GJB5 -3.517 -12.456 2.225E-24 1.097E-22 44.755
HENMT1 3.514 7.953 5.732E-13 5.316E-12 18.702
ZBED2 -3.507 -6.452 1.705E-09 9.338E-09 10.830
MSLN -3.504 -8.558 1.917E-14 2.217E-13 22.061
IL18 -3.415 -9.270 3.223E-16 4.864E-15 26.104
TRIM29 -3.395 -9.588 5.081E-17 8.735E-16 27.934
OSR2 3.346 8.380 5.238E-14 5.671E-13 21.066
LAMB1 -3.346 -6.972 1.162E-10 7.510E-10 13.468
UCP2 3.332 5.788 4.539E-08 1.979E-07 7.620
CPVL -3.331 -7.870 9.043E-13 8.152E-12 18.253
KRT81 -3.320 -5.133 9.424E-07 3.334E-06 4.670
S100A8 -3.292 -5.698 6.982E-08 2.957E-07 7.200
TP53I3 -3.242 -11.149 5.160E-21 1.589E-19 37.057
FOXA1 3.226 5.576 1.241E-07 5.069E-07 6.640
SLC24A3 3.211 6.190 6.356E-09 3.184E-08 9.541
PNLIPRP3 -3.200 -7.998 4.470E-13 4.207E-12 18.948
INHBB 3.180 7.756 1.698E-12 1.468E-11 17.630
RAB38 -3.129 -9.539 6.781E-17 1.137E-15 27.649
ZBTB16 -3.112 -8.869 3.251E-15 4.217E-14 23.816
PLD5 -3.070 -11.039 9.925E-21 2.960E-19 36.408
DFNA5 -3.047 -7.565 4.835E-12 3.890E-11 16.599
FKBP5 -2.988 -10.435 3.528E-19 8.458E-18 32.863
CD109 -2.986 -7.196 3.541E-11 2.475E-10 14.637
CASP1 -2.955 -6.388 2.367E-09 1.267E-08 10.509
SULT1E1 -2.903 -7.749 1.763E-12 1.513E-11 17.594
FAM174B 2.779 5.557 1.353E-07 5.493E-07 6.555
PDZK1IP1 -2.752 -7.028 8.611E-11 5.667E-10 13.743
TNNI2 -2.750 -7.896 7.842E-13 7.133E-12 18.393
CAV1 -2.727 -5.028 1.503E-06 5.131E-06 4.217
IRX4 -2.714 -7.628 3.433E-12 2.825E-11 16.936
KRT80 2.706 5.268 5.131E-07 1.895E-06 5.259
FOXO1 -2.649 -8.921 2.408E-15 3.188E-14 24.113
SNCA -2.635 -8.533 2.211E-14 2.526E-13 21.919
TBL1X 2.565 9.676 3.043E-17 5.434E-16 28.442