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Fig. 2 | BMC Bioinformatics

Fig. 2

From: Reconstructing cancer karyotypes from short read data: the half empty and half full glass

Fig. 2

The paired ends read alignment signature of a deletion rearrangements. The grey area on the reference genome between points A and B was deleted in the sample genome. Any read whose gap falls between A and B on the sample genome will have its ends aligned to locations that are far apart on the same chromosome, indicating a deletion. Other rearrangements leave unique signatures in a similar manner

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