Fig. 3From: Reconstructing cancer karyotypes from short read data: the half empty and half full glassReference and target genomes. a reference (germline) chromosome segmented into intervals separated by breakpoints. b The rearranged chromosome represented by the series of intervals 1,4,-4,-3,2,-1. Genome B contains the bridges \( \left\{{h}_1,{t}_4\right\}, \) \( \left\{{h}_4,{h}_4\right\},\left\{{t}_3,{t}_2\right\} \) and \( \left\{{h}_2,{h}_1\right\} \). Note that \( \left\{{t}_4,{h}_3\right\} \) is not a bridgeBack to article page