A modified GC-specific MAKER gene annotation method reveals improved and novel gene predictions of high and low GC content in Oryza sativa

Table 1 Numbers of high quality rice genes predicted by different MAKER protocols

Annotation	Number of Predictions	Average Transcript Length	AED_0.5	Percentage (%)
Standard Protocol	29,133	1920	26,809	92.0
High GC	26,063	1439	22,600	86.7
Low GC	26,559	2046	25,091	94.5
Six HMMs	29,942	1947	27,395	91.5

ISSN: 1471-2105