Table 3 Time and memory comparison for the 1Gbp datasets
Genome | Time (h) | BLASR | DALIGNER | GraphMap | MHAP | Minimap | HISEA |
|---|---|---|---|---|---|---|---|
Memory (GB) | |||||||
E.coli | Time | 113.0 | 3.0 | 0.3 | 3.0 | 0.1 | 4.0 |
Memory | 7.1 | 124.6 | 42.3 | 210.0 | 8.8 | 25.5 | |
S.cerevisiae | Time | 283.2 | – | 0.6 | 10.6 | 0.3 | 23.5 |
Memory | 13.3 | – | 71.0 | 210.0 | 15.1 | 56.5 | |
C.elegans | Time | 333.6 | 4.1 | 0.6 | 4.3 | 0.2 | 23.6 |
Memory | 14.5 | 248.2 | 59.0 | 210.0 | 9.8 | 46.4 | |
A.thaliana | Time | 43.2 | 8.1 | 0.6 | 5.9 | 0.2 | 12.2 |
Memory | 10.3 | 248.2 | 60.0 | 210.0 | 9.9 | 45.3 | |
D.melanogaster | Time | 355.2 | 12.5 | 0.4 | 4.8 | 0.1 | 95.1 |
Memory | 16.7 | 204.2 | 59.0 | 210.0 | 9.7 | 48.1 |