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Table 9 Assembly time and space comparison; the time is wall clock time in hours, the space is in GB

From: HISEA: HIerarchical SEed Aligner for PacBio data

Genome

Canu + MHAP

MHAP

Canu + HISEA

HISEA

 

30x

50x

30x

50x

30x

50x

30x

50x

 

Time

Space

Time

Space

Time

Time

Time

Space

Time

Space

Time

Time

E.coli

0.4

210

0.6

210

0.1

0.1

0.4

25

0.7

40

0.1

0.1

S.cerevisiae

1.1

210

2.0

210

0.3

0.4

1.2

63

2.9

76

0.2

0.6

C.elegans

24.5

210

59.6

210

2.4

2.5

37.7

83

75.5

82

11.5

17.1

A.thaliana

23.8

210

56.6

210

4.1

9.6

42.3

90

98.0

90

15.3

35.0

D.melanogaster

27.0

210

62.4

210

3.4

5.2

51.8

94

112.8

94

19.7

33.6

  1. The same setup as in Table 8 is used. The best values are in bold