TY - STD TI - Duda RO, Hart PE, Stork DG: Pattern Classification, 2nd edn. New York: Wiley-Interscience; 2000. ID - ref1 ER - TY - JOUR AU - Jain, A. K. PY - 2010 DA - 2010// TI - Data clustering: 50 years beyond K-means JO - Pattern Recogn Lett VL - 31 UR - https://doi.org/10.1016/j.patrec.2009.09.011 DO - 10.1016/j.patrec.2009.09.011 ID - Jain2010 ER - TY - JOUR AU - Mo, Q. AU - Wang, S. AU - Seshan, V. E. AU - Olshen, A. B. AU - Schultz, N. AU - Sander, C. AU - Powers, R. S. AU - Ladanyi, M. AU - Shen, R. PY - 2013 DA - 2013// TI - Pattern discovery and cancer gene identification in integrated cancer genomic data JO - Proc Natl Acad Sci U S A VL - 110 UR - https://doi.org/10.1073/pnas.1208949110 DO - 10.1073/pnas.1208949110 ID - Mo2013 ER - TY - JOUR AU - Monti, S. AU - Tamayo, P. AU - Mesirov, J. AU - Golub, T. PY - 2003 DA - 2003// TI - Consensus clustering: a Resampling-based method for class discovery and visualization of gene expression microarray data JO - Mach Learn VL - 52 UR - https://doi.org/10.1023/A:1023949509487 DO - 10.1023/A:1023949509487 ID - Monti2003 ER - TY - JOUR AU - Wilkerson, M. D. AU - Hayes, D. N. PY - 2010 DA - 2010// TI - ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq170 DO - 10.1093/bioinformatics/btq170 ID - Wilkerson2010 ER - TY - JOUR AU - Fujimoto, A. AU - Furuta, M. AU - Totoki, Y. AU - Tsunoda, T. AU - Kato, M. AU - Shiraishi, Y. AU - Tanaka, H. AU - Taniguchi, H. AU - Kawakami, Y. AU - Ueno, M. PY - 2016 DA - 2016// TI - Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer JO - Nat Genet VL - 48 UR - https://doi.org/10.1038/ng.3547 DO - 10.1038/ng.3547 ID - Fujimoto2016 ER - TY - BOOK AU - Maimon, O. AU - Rokach, L. PY - 2010 DA - 2010// TI - Data mining and knowledge discovery handbook, 2nd edn: Springer-Verlag New York incorporated UR - https://doi.org/10.1007/978-0-387-09823-4 DO - 10.1007/978-0-387-09823-4 ID - Maimon2010 ER - TY - JOUR AU - Fisher, D. PY - 1996 DA - 1996// TI - Iterative optimization and simplification of hierarchical clusterings JO - J Artif Intell Res VL - 4 ID - Fisher1996 ER - TY - CHAP AU - Dhillon, I. S. AU - Guan, Y. AU - Kogan, J. PY - 2002 DA - 2002// TI - Iterative clustering of high dimensional text data augmented by local search BT - The 2002 IEEE international conference on data mining ID - Dhillon2002 ER - TY - CHAP AU - Fayyad, U. M. AU - Reina, C. A. AU - Bradley, P. S. PY - 1998 DA - 1998// TI - Initialization of iterative refinement clustering algorithms BT - Proceedings of the 4th international conference on Knowledge Discovery & Data Mining (KDD98) PB - AAAI Press CY - Menlo Park, California ID - Fayyad1998 ER - TY - BOOK AU - Hastie, T. AU - Tibshirani, R. AU - Friedman, J. PY - 2009 DA - 2009// TI - The elements of statistical learning PB - Springer CY - New York UR - https://doi.org/10.1007/978-0-387-84858-7 DO - 10.1007/978-0-387-84858-7 ID - Hastie2009 ER - TY - CHAP AU - Heller, K. A. AU - Ghahramani, Z. PY - 2005 DA - 2005// TI - Bayesian hierarchical clustering BT - Twenty-second international conference on machine learning (ICML) ID - Heller2005 ER - TY - JOUR AU - Farrell, S. AU - Ludwig, C. PY - 2008 DA - 2008// TI - Bayesian and maximum likelihood estimation of hierarchical response time models JO - Psychon Bull Rev VL - 15 UR - https://doi.org/10.3758/PBR.15.6.1209 DO - 10.3758/PBR.15.6.1209 ID - Farrell2008 ER - TY - JOUR AU - Sharma, A. AU - Boroevich, K. AU - Shigemizu, D. AU - Kamatani, Y. AU - Kubo, M. AU - Tsunoda, T. PY - 2017 DA - 2017// TI - Hierarchical maximum likelihood clustering approach JO - IEEE Trans Biomed Eng VL - 64 UR - https://doi.org/10.1109/TBME.2016.2542212 DO - 10.1109/TBME.2016.2542212 ID - Sharma2017 ER - TY - JOUR AU - Sibson, R. PY - 1973 DA - 1973// TI - SLINK: an optimally efficient algorithm for the single-link cluster method JO - Comput J (British Computer Society) VL - 16 ID - Sibson1973 ER - TY - JOUR AU - Defays, D. PY - 1977 DA - 1977// TI - An efficient algorithm for a complete link method JO - Comput J (British Computer Society) VL - 20 ID - Defays1977 ER - TY - STD TI - Everitt BS, Landau S, Leese M, Stahl D. Cluster analysis, 5th edn. Chichester: Wiley Series in Probability and Statistics; 2011. ID - ref17 ER - TY - STD TI - Podani J. Multivariate data analysis in ecology and systematics: a methodological guide to the SYN-TAX 5.0 package. Amsterdam: SPB Academic Publishing. 1994. ISBN: 9051030940. ID - ref18 ER - TY - JOUR AU - de Amorim, R. C. PY - 2015 DA - 2015// TI - Feature relevance in Ward's hierarchical clustering using the L (p) norm JO - J Classif VL - 32 UR - https://doi.org/10.1007/s00357-015-9167-1 DO - 10.1007/s00357-015-9167-1 ID - de Amorim2015 ER - TY - CHAP AU - Vaithyanathan, S. AU - Dom, B. PY - 2000 DA - 2000// TI - Model-based hierarchical clustering BT - Proceedings of 16th conference uncertainty in artificial intelligence ID - Vaithyanathan2000 ER - TY - STD TI - Goldberger J, Roweis S. Hierarchical clustering of a mixture model. NIPS. 2005:505–12. ID - ref21 ER - TY - JOUR AU - Lock, E. F. AU - Dunson, D. B. PY - 2013 DA - 2013// TI - Bayesian consensus clustering JO - Bioinformatics VL - 29 UR - https://doi.org/10.1093/bioinformatics/btt425 DO - 10.1093/bioinformatics/btt425 ID - Lock2013 ER - TY - JOUR AU - Liu, J. S. AU - Zhang, J. L. AU - Palumbo, M. J. AU - Lawrence, C. E. PY - 2003 DA - 2003// TI - Bayesian clustering with variable and transformation selections JO - Bayesian Statistics VL - 7 ID - Liu2003 ER - TY - JOUR AU - Latch, E. K. AU - Dharmarajan, G. AU - Glaubitz, J. C. AU - Rhodes, O. E. PY - 2006 DA - 2006// TI - Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation JO - Conserv Genet VL - 7 UR - https://doi.org/10.1007/s10592-005-9098-1 DO - 10.1007/s10592-005-9098-1 ID - Latch2006 ER - TY - JOUR AU - Chen, C. AU - Durand, E. AU - Forbes, F. AU - François, O. PY - 2007 DA - 2007// TI - Bayesian clustering algorithms ascertaining spatial population structure: a new computer program and a comparison study JO - Mol Ecol Notes VL - 7 UR - https://doi.org/10.1111/j.1471-8286.2007.01769.x DO - 10.1111/j.1471-8286.2007.01769.x ID - Chen2007 ER - TY - JOUR AU - Ramoni, M. AU - Sebastiani, P. AU - Cohen, P. PY - 2002 DA - 2002// TI - Bayesian clustering by dynamics JO - Mach Learn VL - 47 UR - https://doi.org/10.1023/A:1013635829250 DO - 10.1023/A:1013635829250 ID - Ramoni2002 ER - TY - JOUR AU - Dempster, A. P. AU - Laird, N. M. AU - Rubin, D. B. PY - 1977 DA - 1977// TI - Maximum likelihood from incomplete data via the EM algorithm JO - J R Stat Soc VL - 39 ID - Dempster1977 ER - TY - JOUR AU - Misztal, I. PY - 1994 DA - 1994// TI - Comparison of computing properties of derivative and derivative-free algorithms in variance-component estimation by REML JO - J Anim Breed Genet VL - 111 UR - https://doi.org/10.1111/j.1439-0388.1994.tb00473.x DO - 10.1111/j.1439-0388.1994.tb00473.x ID - Misztal1994 ER - TY - JOUR AU - Denoeux, T. PY - 2013 DA - 2013// TI - Maximum likelihood estimation from uncertain data in the belief function framework JO - IEEE Trans Knowl Data Eng VL - 25 UR - https://doi.org/10.1109/TKDE.2011.201 DO - 10.1109/TKDE.2011.201 ID - Denoeux2013 ER - TY - STD TI - Sharma A, Shigemizu D, Boroevich KA, Lopez Y, Kamatani Y, Kubo M, Tsunoda T. Stepwise iterative maximum likelihood clustering approach. Bmc Bioinformatics. 2016;17(319):1–14. ID - ref30 ER - TY - JOUR AU - Davidon, W. C. PY - 1991 DA - 1991// TI - Variable metric method for minimization JO - SIAM J Optim VL - 1 UR - https://doi.org/10.1137/0801001 DO - 10.1137/0801001 ID - Davidon1991 ER - TY - BOOK AU - Adachi, J. AU - Hasegawa, M. PY - 1996 DA - 1996// TI - MOLPHY version 2.3: programs for molecular phylogenetics based on maximum likelihood ID - Adachi1996 ER - TY - BOOK AU - Long, J. S. PY - 1997 DA - 1997// TI - Regression models for categorical and limited dependent variables PB - Sage Publications CY - London ID - Long1997 ER - TY - JOUR AU - Felsenstein, J. AU - Churchill, G. A. PY - 1996 DA - 1996// TI - A hidden Markov model approach to variation among sites in rate of evolution JO - Mol Biol Evol VL - 13 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025575 DO - 10.1093/oxfordjournals.molbev.a025575 ID - Felsenstein1996 ER - TY - JOUR AU - Fletcher, R. AU - Powell, M. J. D. PY - 1963 DA - 1963// TI - A rapidly convergent descent method for minimization JO - Comput J VL - 6 UR - https://doi.org/10.1093/comjnl/6.2.163 DO - 10.1093/comjnl/6.2.163 ID - Fletcher1963 ER - TY - JOUR AU - von Luxburg, U. PY - 2007 DA - 2007// TI - A tutorial on spectral clustering JO - Stat Comput VL - 17 UR - https://doi.org/10.1007/s11222-007-9033-z DO - 10.1007/s11222-007-9033-z ID - von Luxburg2007 ER - TY - JOUR AU - Lee, D. D. AU - Seung, H. S. PY - 1999 DA - 1999// TI - Learning the parts of objects by non-negative matrix factorization JO - Nature VL - 401 UR - https://doi.org/10.1038/44565 DO - 10.1038/44565 ID - Lee1999 ER - TY - JOUR AU - Li, Y. AU - Ngom, A. PY - 2013 DA - 2013// TI - The non-negative matrix factorization toolbox for biological data mining JO - Source Code Biol Med VL - 8 UR - https://doi.org/10.1186/1751-0473-8-10 DO - 10.1186/1751-0473-8-10 ID - Li2013 ER - TY - JOUR AU - Brunet, J. P. AU - Tamayo, P. AU - Golub, T. R. AU - Mesirov, J. P. PY - 2004 DA - 2004// TI - Metagenes and molecular pattern discovery using matrix factorization JO - Proc Natl Acad Sci U S A VL - 101 UR - https://doi.org/10.1073/pnas.0308531101 DO - 10.1073/pnas.0308531101 ID - Brunet2004 ER - TY - JOUR AU - Kim, H. AU - Park, H. PY - 2007 DA - 2007// TI - Sparse non-negative matrix factorizations via alternating non-negativity-constrained least squares for microarray data analysis JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm134 DO - 10.1093/bioinformatics/btm134 ID - Kim2007 ER - TY - JOUR AU - Chiang, J. -. H. AU - Hao, P. -. Y. PY - 2003 DA - 2003// TI - A new kernel-based fuzzy clustering approach: support vector clustering with cell growing JO - IEEE Trans Fuzzy Syst VL - 11 UR - https://doi.org/10.1109/TFUZZ.2003.814839 DO - 10.1109/TFUZZ.2003.814839 ID - Chiang2003 ER - TY - JOUR AU - Lee, J. AU - Lee, D. PY - 2005 DA - 2005// TI - An improved cluster labeling method for support vector clustering JO - IEEE Trans Pattern Anal Mach Intell VL - 27 UR - https://doi.org/10.1109/TPAMI.2005.47 DO - 10.1109/TPAMI.2005.47 ID - Lee2005 ER - TY - JOUR AU - Lee, J. AU - Lee, D. PY - 2006 DA - 2006// TI - Dynamic characterization of cluster structures for robust and inductive support vector clustering JO - IEEE Trans Pattern Anal Mach Intell VL - 28 UR - https://doi.org/10.1109/TPAMI.2006.225 DO - 10.1109/TPAMI.2006.225 ID - Lee2006 ER - TY - JOUR AU - Horng, S. -. J. AU - Su, M. -. Y. AU - Chen, Y. -. H. AU - Kao, T. -. W. AU - Chen, R. -. J. AU - Lai, J. -. L. AU - Perkasa, C. D. PY - 2011 DA - 2011// TI - A novel intrusion detection system based on hierarchical clustering and support vector machines JO - Expert Syst Appl VL - 38 UR - https://doi.org/10.1016/j.eswa.2010.06.066 DO - 10.1016/j.eswa.2010.06.066 ID - Horng2011 ER - TY - JOUR AU - Jun, S. AU - Park, S. -. S. AU - Jang, D. -. S. PY - 2014 DA - 2014// TI - Document clustering method using dimension reduction and support vector clustering to overcome sparseness JO - Expert Syst Appl VL - 41 UR - https://doi.org/10.1016/j.eswa.2013.11.018 DO - 10.1016/j.eswa.2013.11.018 ID - Jun2014 ER - TY - JOUR AU - Wang, K. AU - Liang, C. AU - Liu, J. AU - Xiao, H. AU - Huang, S. AU - Xu, J. AU - Li, F. PY - 2014 DA - 2014// TI - Prediction of piRNAs using transposon interaction and a support vector machine JO - BMC Bioinformatics VL - 15 UR - https://doi.org/10.1186/s12859-014-0419-6 DO - 10.1186/s12859-014-0419-6 ID - Wang2014 ER - TY - JOUR AU - Ben-Hur, A. AU - Horn, D. AU - Siegelmann, H. T. AU - Vapnik, V. PY - 2001 DA - 2001// TI - Support vector clustering JO - J Mach Learn Res VL - 2 ID - Ben-Hur2001 ER - TY - CHAP AU - Guha, S. AU - Mishra, N. ED - Garofalakis, M. ED - Gehrke, J. ED - Rastogi, R. PY - 2016 DA - 2016// TI - Clustering data streams BT - Data stream management: processing high-speed data streams PB - Springer Berlin Heidelberg CY - Berlin, Heidelberg UR - https://doi.org/10.1007/978-3-540-28608-0_8 DO - 10.1007/978-3-540-28608-0_8 ID - Guha2016 ER - TY - STD TI - Schroff F, Kalenichenko D, Philbin J. FaceNet: a unified embedding for face recognition and clustering. In: The IEEE conference on computer vision and pattern recognition, vol. 2015. ID - ref49 ER - TY - STD TI - Wang YX, Xu H. Noisy sparse subspace clustering. J Mach Learn Res. 2016;17:1–41. ID - ref50 ER - TY - CHAP AU - Cohen, M. B. AU - Elder, S. AU - Musco, C. AU - Musco, C. AU - Persu, M. PY - 2015 DA - 2015// TI - Dimensionality reduction for k-means clustering and low rank approximation BT - Proceedings of the forty-seventh annual ACM symposium on theory of computing PB - 2746569: ACM CY - Portland, Oregon, USA UR - https://doi.org/10.1145/2746539.2746569 DO - 10.1145/2746539.2746569 ID - Cohen2015 ER - TY - JOUR AU - Esmin, A. A. A. AU - Coelho, R. A. AU - Matwin, S. PY - 2015 DA - 2015// TI - A review on particle swarm optimization algorithm and its variants to clustering high-dimensional data JO - Artif Intell Rev VL - 44 UR - https://doi.org/10.1007/s10462-013-9400-4 DO - 10.1007/s10462-013-9400-4 ID - Esmin2015 ER - TY - JOUR AU - Chi, E. C. AU - Lange, K. PY - 2015 DA - 2015// TI - Splitting methods for convex clustering JO - J Comput Graph Stat VL - 24 UR - https://doi.org/10.1080/10618600.2014.948181 DO - 10.1080/10618600.2014.948181 ID - Chi2015 ER - TY - JOUR AU - Liang, X. L. AU - Li, W. F. AU - Zhang, Y. AU - Zhou, M. C. PY - 2015 DA - 2015// TI - An adaptive particle swarm optimization method based on clustering JO - Soft Comput VL - 19 UR - https://doi.org/10.1007/s00500-014-1262-4 DO - 10.1007/s00500-014-1262-4 ID - Liang2015 ER - TY - JOUR AU - Sharma, A. AU - Imoto, S. AU - Miyano, S. PY - 2012 DA - 2012// TI - A top-r feature selection algorithm for microarray gene expression data JO - IEEE/ACM Trans Comput Biol Bioinform VL - 9 UR - https://doi.org/10.1109/TCBB.2011.151 DO - 10.1109/TCBB.2011.151 ID - Sharma2012 ER - TY - JOUR AU - Sharma, A. AU - Paliwal, K. K. PY - 2012 DA - 2012// TI - A new perspective to null linear discriminant analysis method and its fast implementation using random matrix multiplication with scatter matrices JO - Pattern Recogn VL - 45 UR - https://doi.org/10.1016/j.patcog.2011.11.018 DO - 10.1016/j.patcog.2011.11.018 ID - Sharma2012 ER - TY - JOUR AU - Paliwal, K. K. AU - Sharma, A. PY - 2010 DA - 2010// TI - Improved direct LDA and its application to DNA microarray gene expression data JO - Pattern Recogn Lett VL - 31 UR - https://doi.org/10.1016/j.patrec.2010.08.003 DO - 10.1016/j.patrec.2010.08.003 ID - Paliwal2010 ER - TY - JOUR AU - Sharma, A. AU - Paliwal, K. K. PY - 2010 DA - 2010// TI - Regularisation of eigenfeatures by extrapolation of scatter-matrix in face-recognition problem JO - Electron Lett VL - 46 UR - https://doi.org/10.1049/el.2010.0755 DO - 10.1049/el.2010.0755 ID - Sharma2010 ER - TY - JOUR AU - Sharma, A. AU - Paliwal, K. K. PY - 2010 DA - 2010// TI - Improved nearest centroid classifier with shrunken distance measure for null LDA method on cancer classification problem JO - Electron Lett VL - 46 UR - https://doi.org/10.1049/el.2010.1927 DO - 10.1049/el.2010.1927 ID - Sharma2010 ER - TY - JOUR AU - Sharma, A. AU - Paliwal, K. K. PY - 2008 DA - 2008// TI - Cancer classification by gradient LDA technique using microarray gene expression data JO - Data Knowl Eng VL - 66 UR - https://doi.org/10.1016/j.datak.2008.04.004 DO - 10.1016/j.datak.2008.04.004 ID - Sharma2008 ER - TY - JOUR AU - Sharma, A. AU - Paliwal, K. K. PY - 2008 DA - 2008// TI - A gradient linear discriminant analysis for small sample sized problem JO - Neural Process Lett VL - 27 UR - https://doi.org/10.1007/s11063-007-9056-7 DO - 10.1007/s11063-007-9056-7 ID - Sharma2008 ER - TY - JOUR AU - Sharma, A. AU - Paliwal, K. K. AU - Onwubolu, G. C. PY - 2006 DA - 2006// TI - Class-dependent PCA, MDC and LDA: a combined classifier for pattern classification JO - Pattern Recogn VL - 39 UR - https://doi.org/10.1016/j.patcog.2006.02.001 DO - 10.1016/j.patcog.2006.02.001 ID - Sharma2006 ER - TY - CHAP AU - Sharma, A. AU - Boroevich, K. AU - Shigemizu, D. AU - Kamatani, Y. AU - Kubo, M. AU - Tsunoda, T. PY - 2016 DA - 2016// TI - Hierarchical maximum likelihood clustering approach BT - IEEE transactions on biomedical engineering ID - Sharma2016 ER - TY - JOUR AU - Rand, W. M. PY - 1971 DA - 1971// TI - Objective criteria for the evaluation of clustering methods JO - J Am Stat Assoc VL - 66 UR - https://doi.org/10.1080/01621459.1971.10482356 DO - 10.1080/01621459.1971.10482356 ID - Rand1971 ER - TY - JOUR AU - Hubert, L. AU - Arabie, P. PY - 1985 DA - 1985// TI - Comparing partitions JO - J Classif VL - 2 UR - https://doi.org/10.1007/BF01908075 DO - 10.1007/BF01908075 ID - Hubert1985 ER - TY - JOUR AU - Vinh, N. X. AU - Epps, J. AU - Bailey, J. PY - 2010 DA - 2010// TI - Information theoretic measures for Clusterings comparison: variants, properties, normalization and correction for chance JO - J Mach Learn Res VL - 11 ID - Vinh2010 ER - TY - JOUR AU - Golub, T. R. AU - Slonim, D. K. AU - Tamayo, P. AU - Huard, C. AU - Gaasenbeek, M. AU - Mesirov, J. P. AU - Coller, H. AU - Loh, M. L. AU - Downing, J. R. AU - Caligiuri, M. A. PY - 1999 DA - 1999// TI - Molecular classification of cancer: class discovery and class prediction by gene expression monitoring JO - Science VL - 286 UR - https://doi.org/10.1126/science.286.5439.531 DO - 10.1126/science.286.5439.531 ID - Golub1999 ER - TY - JOUR AU - Khan, J. AU - Wei, J. S. AU - Ringnér, M. AU - Saal, L. H. AU - Ladanyi, M. AU - Westermann, F. AU - Berthold, F. AU - Schwab, M. AU - Antonescu, C. R. AU - Peterson, C. PY - 2001 DA - 2001// TI - Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks JO - Nat Med VL - 7 UR - https://doi.org/10.1038/89044 DO - 10.1038/89044 ID - Khan2001 ER - TY - JOUR AU - Armstrong, S. A. AU - Staunton, J. E. AU - Silverman, L. B. AU - Pieters, R. PY - 2002 DA - 2002// TI - Boer MLd, Minden MD, Sallan SE, Lander ES, Golub TR, Korsmeyer SJ: MLL translocations specify a distinct gene expression profile that distinguishes a unique leukemia JO - Nat Genet VL - 30 UR - https://doi.org/10.1038/ng765 DO - 10.1038/ng765 ID - Armstrong2002 ER - TY - JOUR AU - Yeoh, E. -. J. AU - Ross, M. E. AU - Shurtleff, S. A. AU - Williams, W. K. AU - Patel, D. AU - Mahfouz, R. AU - Behm, F. G. AU - Raimondi, S. C. AU - Relling, M. V. AU - Patel, A. PY - 2002 DA - 2002// TI - Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling JO - Cancer Cell VL - 1 UR - https://doi.org/10.1016/S1535-6108(02)00032-6 DO - 10.1016/S1535-6108(02)00032-6 ID - Yeoh2002 ER - TY - JOUR AU - Ramaswamy, S. AU - Tamayo, P. AU - Rifkin, R. AU - Mukherjee, S. AU - Yeang, C. H. AU - Angelo, M. AU - Ladd, C. AU - Reich, M. AU - Latulippe, E. AU - Mesirov, J. P. PY - 2001 DA - 2001// TI - Multiclass cancer diagnosis using tumor gene expression signatures JO - Proc Natl Acad Sci U S A VL - 98 UR - https://doi.org/10.1073/pnas.211566398 DO - 10.1073/pnas.211566398 ID - Ramaswamy2001 ER - TY - JOUR AU - Gordon, G. J. AU - Jensen, R. V. AU - Hsiao, L. L. AU - Gullans, S. R. AU - Blumenstock, J. E. AU - Ramaswamy, S. AU - Richards, W. G. AU - Sugarbaker, D. J. AU - Bueno, R. PY - 2002 DA - 2002// TI - Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma JO - Cancer Res VL - 62 ID - Gordon2002 ER - TY - JOUR AU - Kwon, O. H. AU - Park, J. L. AU - Kim, M. AU - Kim, J. H. AU - Lee, H. C. AU - Kim, H. J. AU - Noh, S. M. AU - Song, K. S. AU - Yoo, H. S. AU - Paik, S. G. PY - 2011 DA - 2011// TI - Aberrant up-regulation of LAMB3 and LAMC2 by promoter demethylation in gastric cancer JO - Biochem Bioph Res Co VL - 406 UR - https://doi.org/10.1016/j.bbrc.2011.02.082 DO - 10.1016/j.bbrc.2011.02.082 ID - Kwon2011 ER - TY - STD TI - Du P, Zhang XA, Huang CC, Jafari N, Kibbe WA, Hou LF, Lin SM. Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. Bmc Bioinformatics. 2010;11 ID - ref74 ER - TY - JOUR AU - Yamada, N. AU - Yasui, K. AU - Dohi, O. AU - Gen, Y. AU - Tomie, A. AU - Kitaichi, T. AU - Iwai, N. AU - Mitsuyoshi, H. AU - Sumida, Y. AU - Moriguchi, M. PY - 2016 DA - 2016// TI - Genome-wide DNA methylation analysis in hepatocellular carcinoma JO - Oncol Rep VL - 35 UR - https://doi.org/10.3892/or.2016.4619 DO - 10.3892/or.2016.4619 ID - Yamada2016 ER - TY - CHAP AU - Fraley, C. AU - Raftery, A. E. PY - 2006 DA - 2006// TI - MCLUST version 3 for R: normal mixture modeling and model-based clustering BT - Technical report no 504 PB - Department of Statistics, University of Washington CY - USA Seattle, WA ID - Fraley2006 ER - TY - JOUR AU - Elhamifar, E. AU - Vidal, R. PY - 2013 DA - 2013// TI - Sparse subspace clustering: algorithm, theory, and applications JO - IEEE Trans Pattern Anal Mach Intell VL - 35 UR - https://doi.org/10.1109/TPAMI.2013.57 DO - 10.1109/TPAMI.2013.57 ID - Elhamifar2013 ER - TY - JOUR AU - Bock, C. PY - 2012 DA - 2012// TI - Analysing and interpreting DNA methylation data JO - Nat Rev Genet VL - 13 UR - https://doi.org/10.1038/nrg3273 DO - 10.1038/nrg3273 ID - Bock2012 ER -