From: GTZ: a fast compression and cloud transmission tool optimized for FASTQ files
Dataset | Size (MB) | Compression Time (s) + Data best upload time | ||||||
---|---|---|---|---|---|---|---|---|
GTZ | DSRC2 | QUIP | LW-FQZip | Fqzcomp | LFQC | pigz | ||
ERR233152 | 556.1 | 19.0 | 13.4 | 10.4 | 284.4 | 13.4 | 297.4 | 3.4 |
SRR935126 | 9754.6 | 49.0 | 48.8 | 202.8 | 3973.8 | 198.8 | 3617.8 | 136.8 |
SRR489793 | 12,807 | 51.0 | 59.2 | 353.2 | 4903.2 | 299.2 | 4263.2 | 132.2 |
SRR801793 | 2756.2 | 43.0 | 30.2 | 61.2 | 1214.2 | 75.2 | 1145.2 | 24.2 |
SRR125858 | 50,744.2 | 178.0 | 193.6 | 1084.6 | 18,340.6 | 1017.6 | 10,242.6 | 521.6 |
SRR5419422 | 15,094.6 | 26.0 | 19.1 | 341.1 | 4246.1 | 279.1 | ERROR | 79.1 |
ERR1137269 | 56,543 | 117.0 | 77.2 | 851.2 | 12,063.2 | 896.2 | ERROR | 258.2 |
NA12878 (read 2) | 202,631 | 820.0 | 862.1 | 4865.1 | TLE | 4551.1 | TLE | 782.1 |
Average speed (MB/s) | Â | 269.3 | 269.1 | 45.2 | 7.8 | 47.9 | 17.9 | 181.1 |