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Table 5 Total time of different tools on 8 FASTQ datasets with maximum bandwidth

From: GTZ: a fast compression and cloud transmission tool optimized for FASTQ files

Dataset

Size (MB)

Compression Time (s) + Data best upload time

GTZ

DSRC2

QUIP

LW-FQZip

Fqzcomp

LFQC

pigz

ERR233152

556.1

19.0

13.4

10.4

284.4

13.4

297.4

3.4

SRR935126

9754.6

49.0

48.8

202.8

3973.8

198.8

3617.8

136.8

SRR489793

12,807

51.0

59.2

353.2

4903.2

299.2

4263.2

132.2

SRR801793

2756.2

43.0

30.2

61.2

1214.2

75.2

1145.2

24.2

SRR125858

50,744.2

178.0

193.6

1084.6

18,340.6

1017.6

10,242.6

521.6

SRR5419422

15,094.6

26.0

19.1

341.1

4246.1

279.1

ERROR

79.1

ERR1137269

56,543

117.0

77.2

851.2

12,063.2

896.2

ERROR

258.2

NA12878 (read 2)

202,631

820.0

862.1

4865.1

TLE

4551.1

TLE

782.1

Average speed (MB/s)

 

269.3

269.1

45.2

7.8

47.9

17.9

181.1

  1. The best results of all the tools are boldfaced