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Table 1 Additional VCF information fields. After running pyAmpli a new VCF is generated with additional INFO fields. These fields provide the user information on amplicon fractions, counts and offsets of reference and alternative alleles

From: pyAmpli: an amplicon-based variant filter pipeline for targeted resequencing data

INFO ID

Description

AmpFR

Amplicon fraction for reference allele

AmpFA

Amplicon fraction for alternative allele

AmpCR

Amplicon count for reference allele

AmpCA

Amplicon count for alternative allele

AmpC

Amplicon total count

AmpF_OA

Amplicon count offset compared to allelic depth, for alternative allele

AmpF_OR

Amplicon count offset compared to allelic depth, for reference allele