From: pyAmpli: an amplicon-based variant filter pipeline for targeted resequencing data
Variant | Filter | True positive rate (%) | False positive rate (%) | Number of variants |
---|---|---|---|---|
Germline | – | 39 | 61 | 15,673 |
 | + | 64 | 36 | 11,368 |
Somatic | – | 29 | 71 | 4028 |
 | + | 37 | 63 | 885 |
LOH | – | 45 | 55 | 934 |
 | + | 81 | 19 | 208 |