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Fig. 2 | BMC Bioinformatics

Fig. 2

From: PIVOT: platform for interactive analysis and visualization of transcriptomics data

Fig. 2

Selected analysis modules in PIVOT. a The table on the left lists basic sample statistics. The selected statistics are plotted below the table, and clicking a sample in the table will plot its count distribution. b Mean-Standard deviation plot (top left, with vsn package), rank frequency plot (top right) and mean variability plot (bottom, with Seurat package). c The t-SNE module plots 1D, 2D and 3D projections (3D not shown due to space). d Feature heatmap with the top 100 differentially expressed genes reported by DESeq2 likelihood ratio test

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