| TASSEL | IGST | Fast-GBS | Stacks | GB-eaSy |
---|---|---|---|---|---|
Population 1 | |||||
Missing data per line | 84.5% | 85.4% | 85.0% | 89.7% | 83.4% |
SNPs in 25% of lines | 6812 | 12,334 | 18,731 | 3576 | 23,633 |
SNPs in 50% of lines | 1237 | 1714 | 2984 | 202 | 3558 |
SNPs in 75% of lines | 736 | 112 | 382 | 31 | 407 |
SNPs in 90% of lines | 335 | 25 | 75 | 2 | 119 |
Population 2 | |||||
Missing data per line | 59.4% | 70.8% | 70.0% | 66.1% | 71.5% |
SNPs in 25% of lines | 65,119 | 68,805 | 122,801 | 142,154 | 120,437 |
SNPs in 50% of lines | 35,107 | 39,055 | 76,485 | 52,991 | 76,717 |
SNPs in 75% of lines | 2185 | 1548 | 4418 | 372 | 4880 |
SNPs in 90% of lines | 973 | 26 | 219 | 21 | 187 |
Population 3 | |||||
Missing data per line | 62.4% | 69.3% | 68.4% | 67.2% | 69.6% |
SNPs in 25% of lines | 54,960 | 65,695 | 88,904 | 69,300 | 88,025 |
SNPs in 50% of lines | 18,859 | 22,369 | 32,077 | 19,756 | 32,698 |
SNPs in 75% of lines | 6196 | 7813 | 12,204 | 4539 | 13,005 |
SNPs in 90% of lines | 775 | 479 | 934 | 98 | 1352 |