Table 2 Sensitivity and PPV results for BiokoP, pKiss and McGenus on pseudoknotted RNAs
From: Bi-objective integer programming for RNA secondary structure prediction with pseudoknots
NbSol | BiokoP | pKiss | McGenus | BiokoP | pKiss | McGenus | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sensitivity s.d. | PPV s.d. | |||||||||||
1 | 80.6 | 22.3 | 79.5 | 24.2 | 73.4 | 26.6 | 75.0 | 25.5 | 75.1 | 26.6 | 74.1 | 28.6 |
2 | 80.6 | 22.3 | 77.6 | 23.5 | 67.1 | 26.7 | 73.2 | 25.5 | 74.8 | 26.2 | 69.7 | 31.6 |
3 | 80.1 | 22.4 | 75.8 | 23.6 | 63.8 | 30.5 | 71.6 | 25.7 | 74.2 | 26.4 | 67.3 | 32.7 |
4 | 79.5 | 22.8 | 74.4 | 23.8 | 62.2 | 30.8 | 70.5 | 26.0 | 73.5 | 26.6 | 66.2 | 33.3 |
5 | 79.0 | 23.1 | 73.1 | 24.0 | 61.0 | 31.0 | 69.7 | 26.2 | 72.9 | 26.8 | 65.5 | 33.6 |
10 | 77.0 | 23.6 | 68.8 | 24.1 | 57.4 | 31.9 | 67.4 | 26.4 | 70.9 | 27.1 | 62.6 | 35.3 |
15 | 75.8 | 23.6 | 65.7 | 24.5 | 55.7 | 32.6 | 66.4 | 26.4 | 69.3 | 27.6 | 61.0 | 36.1 |
20 | 75.1 | 23.6 | 63.2 | 25.0 | 54.2 | 33.1 | 65.9 | 26.4 | 67.9 | 28.1 | 59.4 | 36.8 |
25 | 74.5 | 23.5 | 61.2 | 25.3 | 53.3 | 33.4 | 65.5 | 26.3 | 66.7 | 28.5 | 58.4 | 37.2 |
30 | 73.8 | 23.5 | 59.5 | 25.5 | 53.3 | 33.4 | 65.0 | 26.3 | 65.2 | 28.9 | 58.5 | 37.2 |