From: Tuning iteration space slicing based tiled multi-core code implementing Nussinov’s RNA folding
y1 | y2 | a 0 | a 1 | a 2 | a 3 | a 4 | Formula | Lines, |
---|---|---|---|---|---|---|---|---|
b1,2,3=[23,47,113] | b1,2,3=[37,79,167] | [see Additional file 2] | ||||||
70 | 116 | 0 | 1 | 1 | 0 | 0 | b1+b2 | 6, 10, 56 |
93 | 153 | 0 | 2 | 1 | 0 | 0 | 2*b1+b2 | 6 |
1081 | 2923 | 1 | 0 | 0 | 0 | 0 | b1*b2 | 6 |
22 | 36 | 0 | 1 | 0 | 0 | -1 | b1-1 | 10 |
23 | 37 | 0 | 1 | 0 | 0 | 0 | b1 | 10, 15, 43, 46, 56, 62 |
21 | 35 | 0 | 0 | 1 | 0 | -2 | b1-2 | 10 |
113 | 167 | 0 | 0 | 0 | 1 | 0 | b3 | 40, 49, 59 |
112 | 166 | 0 | 0 | 0 | 1 | -1 | b3-1 | 49, 59 |
46 | 78 | 0 | 0 | 1 | 0 | -1 | b2-1 | 56 |
47 | 79 | 0 | 0 | 1 | 0 | 0 | b2 | 10, 15, 21, 30, 34, |
40, 43, 49, 52, 59 |