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Table 1 Finding integer coefficients a i , i=0…4, of the model y=a0b0 + a1b2 + a1b1 + a2b2 + a3b3 + a4, where b0= b1* b2

From: Tuning iteration space slicing based tiled multi-core code implementing Nussinov’s RNA folding

y1

y2

a 0

a 1

a 2

a 3

a 4

Formula

Lines,

b1,2,3=[23,47,113]

b1,2,3=[37,79,167]

      

[see Additional file 2]

70

116

0

1

1

0

0

b1+b2

6, 10, 56

93

153

0

2

1

0

0

2*b1+b2

6

1081

2923

1

0

0

0

0

b1*b2

6

22

36

0

1

0

0

-1

b1-1

10

23

37

0

1

0

0

0

b1

10, 15, 43, 46, 56, 62

21

35

0

0

1

0

-2

b1-2

10

113

167

0

0

0

1

0

b3

40, 49, 59

112

166

0

0

0

1

-1

b3-1

49, 59

46

78

0

0

1

0

-1

b2-1

56

47

79

0

0

1

0

0

b2

10, 15, 21, 30, 34,

        

40, 43, 49, 52, 59