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Table 5 Execution time (in seconds) of the Nussinov RNA folding codes for 32 threads and different lengths of RNA strands. mRNAs acquired from the NCBI database

From: Tuning iteration space slicing based tiled multi-core code implementing Nussinov’s RNA folding

mRNA definition Lenght Serial time Chang Li PluTo [ 8×8×1] ISS [ 2×6×300] ISS [ 1×96×8]
MAPK1, trans. var. 1 5916 606,32 31,05 14,95 25,94 19,52 12,92
MAPK1, trans. var 2 1514 2,30 0,25 0,21 0,16 0,14 0,32
MAP2K5, trans. var 2 2355 15,57 0,92 0,48 0,82 0,51 0,72
MAP2K7, trans. var. 1 3525 102,32 4,46 2,74 3,51 2,63 2,53
MAP2K6, trans. var. 2 13577 6127,09 437,60 168,25 347,78 257,00 152,54
MAP3K2 10870 3033,73 229,53 86,30 171,54 121,44 70,68
MAP4K3, trans. var 1 4362 221,82 10,07 6,06 8,19 6,46 5,21
MAP4K4, trans. var. 4 7183 926,43 54,43 25,65 47,40 32,67 21,45