Skip to main content
Fig. 3 | BMC Bioinformatics

Fig. 3

From: TERIUS: accurate prediction of lncRNA via high-throughput sequencing data representing RNA-binding protein association

Fig. 3

Utilizing RBPs showing translation-dependent association. (a) Association profiles of proteins that bind preferentially to 3’UTR of protein-coding genes in K562 (left) or HepG2 (right) cell line. (b) Translation-dependent localization of UPF1 to 3’UTR. Data are shown for untreated and puromycin (puro) or cycloheximide (CHX) treated HeLa cell (left) and mouse embryonic stem cell (mESC). (c) Train and test ROC curve of UAS. Dot and arrow indicate the cutoff point (0.5) used in this study. (d) Example of 3’UTR fragment annotated as lncRNA in GENCODE version 19. Data tracks below are CLIP-seq, RNA-seq and CAGE signal

Back to article page