Table 1 Execution time of each program of Closha and Galaxy in the RNA-Seq analysis
From: Closha: bioinformatics workflow system for the analysis of massive sequencing data
Analysis steps (programs) | Running time | |
|---|---|---|
Closha | Galaxy | |
Data transfer | 9 mins | 1 h 14 mins |
FastQC | 3 mins | 5 mins |
Sickle | 3 mins | 11 mins |
TopHat2 | 2 h 36 mins | 3 h 4 mins |
SAMtools | 13 mins | 15 mins |
Cufflinks | 10 mins | 16 mins |
Cuffdiff and voom | 30 mins | 1 h 6 mins |
Total running time: 3 h 44 mins | Total running time: 6 h 11 mins | |