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Table 4 Site-wise performance of HH-MOTiF depending on the benchmark-prediction overlap logic. Generation of this table is based on the option set A1 and its variants, as specified in Additional file 1

From: SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data

N P Applying to TPR PPV
1 0 currenta 0.236 0.564
25 current 0.233 0.557
shortest 0.233 0.558
longest 0.231 0.557
patched 0.233 0.557
50 current 0.226 0.504
shortest 0.229 0.552
longest 0.214 0.484
patched 0.226 0.508
75 current 0.194 0.303
shortest 0.220 0.516
longest 0.136 0.226
patched 0.194 0.304
3 0 currentb 0.229 0.545
patched 0.229 0.545
5 0 currentb 0.178 0.397
patched 0.179 0.399
  1. aall four options are equal for these N (minimal required number of residues) and P (minimal percentage of a matching CSE)bcurrent, shortest, and longest are equal for these N and P