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Table 4 Site-wise performance of HH-MOTiF depending on the benchmark-prediction overlap logic. Generation of this table is based on the option set A1 and its variants, as specified in Additional file 1

From: SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data

N

P

Applying to

TPR

PPV

1

0

currenta

0.236

0.564

25

current

0.233

0.557

shortest

0.233

0.558

longest

0.231

0.557

patched

0.233

0.557

50

current

0.226

0.504

shortest

0.229

0.552

longest

0.214

0.484

patched

0.226

0.508

75

current

0.194

0.303

shortest

0.220

0.516

longest

0.136

0.226

patched

0.194

0.304

3

0

currentb

0.229

0.545

patched

0.229

0.545

5

0

currentb

0.178

0.397

patched

0.179

0.399

  1. aall four options are equal for these N (minimal required number of residues) and P (minimal percentage of a matching CSE)bcurrent, shortest, and longest are equal for these N and P
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BMC Bioinformatics

ISSN: 1471-2105

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