Skip to main content
Fig. 2 | BMC Bioinformatics

Fig. 2

From: Inferring synteny between genome assemblies: a systematic evaluation

Fig. 2

Synteny blocks identified between un-fragmented and fragmented C. elegans chromosome IV. The original sequence is used as the reference and coloured in black. Established synteny regions (outer number stands for synteny coverage) of the 5 different program packages: DAGchainer (red), i-ADHoRe (yellow), MCScanX (green), SynChro (light blue), and Satsuma (blue) are joined to query sequences with different levels of fragmentation (un-fragmented, 1 Mb and 100 kb fragmented). Chromosome positions are labeled in megabases (Mb). For plots of other chromosomes see Additional file 3: Figure S2 and Additional file 4: Figure S3

Back to article page