Fig. 3

A zoomed-in 600 kb region of synteny identified between the reference C. elegans genome and a 100 kb fragmented assembly. Synteny blocks in fragmented assembly defined by the five detection programs DAGchainer (red), i-ADHoRe (yellow), MCScanX (green), SynChro (light blue), and Satsuma (blue) are drawn as rectangles. Fragmented sites are labeled by vertical red dashed lines. Genes are shown as burgundy rectangles, with gene starts marked using dark blue lines. Two scenarios are marked: a) a synteny block was not identified by MCScanX, and b) several synteny blocks only detected by SynChro