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Table 1 Summary of the performance of CONFOLD2 on PSICOV, CASP11, and CASP12 datasets

From: CONFOLD2: improved contact-driven ab initio protein structure modeling

Dataset

Contact Precision (L/5)

TM-score of Models

 

Method

PSR+MR+LR

PLR

Best-of-200

Best-of-5

PSICOV-150

PSICOV

72.6

64.0

0.57

0.52

PSICOV-150

MetaPSICOV

88.4

77.2

0.65

0.62

CASP12 all

Raptor-X

71.3

58.6

0.46

0.41

CASP12 single domain

Raptor-X

70.6

58.6

0.49

0.44

CASP12 multi-domain

Raptor-X

72.0

58.7

0.44

0.38

CASP11 all

CONSIP2

71.8

50.2

0.46

0.41

CASP11 single domain

CONSIP2

75.8

57.4

0.52

0.48

CASP11 multi-domain

CONSIP2

67.7

42.4

0.40

0.34

  1. Mean contact precision of top L/5 for (i) all (short-range, medium-range, and long-range: PSR+MR+LR) contacts, and (ii) long-range contacts (PLR) is reported for all the datasets. The TM-score of the best-of-200 and best-of-5 models reconstructed by CONFOLD2 are also presented. Results for single-domain and multi-domain subsets of the CASP11 and CASP12 datasets are also reported separately
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BMC Bioinformatics

ISSN: 1471-2105

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