Program | DMR Identification | Execution |
---|---|---|
Defiant | Weighted Welch Expansion | Binary |
BSmooth [23] | Local-likelihood smoothing with binomial test | R |
MethylKit [25] | Fisher’s exact test [37] or logistic regression with tiling | R |
MethylSig [26] | beta-binomial [64] | R |
Metilene [27] | p-value by beta binomial | Binary |
MOABS [65] | beta-binomial | Binary |
RADMeth [28] | beta-binomial regression | Binary |