Skip to main content

Table 2 Fourteen Ontologies used for sampling synonymous pairs in Bio-SimVerb and Bio-SimLex

From: Bio-SimVerb and Bio-SimLex: wide-coverage evaluation sets of word similarity in biomedicine

Ontology

Reference

Chemical Entities of Biological Interest (ChEBI)

[53]

Gene Ontology (GO)

[54, 55]

NCI Thesaurus (NCIT)

[56]

Foundational Model of Anatomy (FMA)

[57]

Disease Ontology (DOID)

[58]

Uberon multi-species anatomy ontology (UBERON)

[59, 60]

Plant Ontology (PO)

[61, 62]

Plant Phenotypes and Traits (PATO)

[63]

Ontology for Biomedical Investigations(OBI)

[64]

Molecular Process Ontology (MOP)

[65]

Zebrafish anatomy and development (ZFA)

[66]

Protein modification (PSI-MOD)

[67]

Common Anatomy Reference Ontology (CARO)

[68]

Xenopus anatomy and development (XAO)

[69, 70]