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Table 7 Intrinsic (left 5 columns) and extrinsic scores (right 4 columns) of the biomedical representation models trained using different window sizes

From: Bio-SimVerb and Bio-SimLex: wide-coverage evaluation sets of word similarity in biomedicine

Window Size

UMN-rel(ρ)

UMN-sim(ρ)

MayoSRS (ρ)

Bio-SimVerb(ρ)

Bio-SimLex(ρ)

BC4CHECMD (F-score)

BC2GM (F-score)

AnatEM (F-score)

JNLPBA (F-score)

1

0.5317

0.5759

0.5551

0.4594

0.7294

81.51

70.06

82.16

65.34

2

0.563

0.6144

0.6238

0.4696

0.7207

81.44

70

82.21

65.51

4

0.5768

0.6247

0.581

0.464

0.7188

81.5

70.04

82

65.75

5

0.5767

0.6271

0.5744

0.4638

0.7151

81.37

70.20

81.32

65.16

8

0.582

0.6377

0.5975

0.4611

0.7086

81.24

69.56

80.99

65.53

16

0.5888

0.6431

0.6123

0.4667

0.7034

81.02

69.39

80.72

64.78

20

0.5896

0.6418

0.6319

0.4584

0.7031

81.12

69.62

80.49

65.19

25

0.6018

0.6489

0.6188

0.4519

0.7004

81.07

69.93

80.92

65.14

30

0.6007

0.6457

0.6486

0.4502

0.7043

80.71

69.2

81.03

64.79

  1. The bolded text implies the best performing models of their kind