Table 9 Average pairwise sequence identity (in %) for each protein class
From: Exploring the potential of 3D Zernike descriptors and SVM for protein–protein interface prediction
Protein class | A | AB | EI | ER | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
r | l | r | l | r | l | r | l | |||||||||
u | b | u | b | u | b | u | b | u | b | u | b | u | b | u | b | |
Whole set | 44.04 | 44.02 | 41.52 | 42.32 | 42.98 | 42.95 | 38.19 | 38.57 | 41.80 | 40.86 | 42.36 | 43.96 | 33.70 | 35.43 | 41.84 | 40.48 |
Training set | 47.02 | 46.88 | 34.44 | 40.12 | 45.15 | 45.33 | 41.93 | 41.93 | 39.91 | 39.40 | 42.75 | 43.02 | 33.07 | 36.28 | 43.93 | 42.61 |
Test set | 46.49 | 46.40 | 44.43 | 53.07 | 39.41 | 39.41 | 31.43 | 43.17 | 38.98 | 39.70 | 49.09 | 50.80 | 36.65 | 36.20 | 43.98 | 43.62 |
Protein class | ES | OG | OR | OX | ||||||||||||
r | l | r | l | r | l | r | l | |||||||||
u | b | u | b | u | b | u | b | u | b | u | b | u | b | u | b | |
Whole set | 41.61 | 40.21 | 42.31 | 44.60 | 34.63 | 37.31 | 38.57 | 37.26 | 36.60 | 35.83 | 37.91 | 37.71 | 38.48 | 39.98 | 38.61 | 35.68 |
Training set | 41.52 | 42.25 | 46.96 | 47.31 | 37.15 | 33.91 | 36.34 | 34.19 | 37.98 | 37.30 | 39.07 | 38.82 | 40.32 | 39.99 | 39.25 | 35.24 |
Test set | 35.79 | 37.69 | 42.30 | 47.33 | 35.41 | 37.05 | 44.49 | 41.81 | 40.82 | 45.26 | 31.76 | 30.76 | 37.20 | 37.61 | 37.95 | 39.09 |