Table 1 sRNA-seq web application comparison
From: Oasis 2: improved online analysis of small RNA-seq data
Feature | Oasis 2 | Oasis | omiRas | mirTools 2.0 | MAGI | Chimira | sRNAtoolbox |
|---|---|---|---|---|---|---|---|
FASTQ compression | ✓ | ✓ | ✓ | ✓ | |||
miRNA prediction | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | |
miRNA modifications and edits | ✓ | ✓ | |||||
Novel miRNA database | ✓ | ||||||
Infection and cross-species analysis | ✓ | ✓ | |||||
Non-model organism | ✓ | ✓ | |||||
Differential expression | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |
Multivariate differential expression | ✓ | ✓ | ✓ | ||||
Classification | ✓ | ✓ | |||||
Novel miRNA target prediction | ✓ | ✓ | ✓ | ✓ | ✓ | ||
Pathway/GO analysis | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | |
Batch job submission (API) | ✓ | ✓ | |||||
Genome browser | ✓ |