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Table 3 Runtime comparison of different sRNA-seq web applications

From: Oasis 2: improved online analysis of small RNA-seq data

Demo Dataset Oasis 2 (total) 1 Oasis (total)1 MAGI
(total)
Chimira
(total)
omiRas mirTools7 2.0 sRNAtoolbox
AD
(287 GB)4
8 h31m50s 12h29m12s NA2 NA4 NA5 NA NA
Psoriasis
(48 GB)
1h35m17s 5h49m4s 48h3 3h3m12s NA6 NA NA
Renal Cancer
(9 GB)
31m43s 1h8m41s 8h3 47m11s 9h31m NA NA
  1. 1Run time estimate includes the data compression and decompression, the sRNA Detection, DE Analysis, and Classification. 2 We could not get MAGI to upload all AD files. Most probably it has a problem with the quality or format of one of the files. 3 These values were obtained from the MAGI website. 4 Chimira does not support the analysis of more than 25 files at a time, which prohibited us from getting runtime estimates for the AD dataset. 5 omiRas did not finish uploading files, which prohibited us from getting runtime estimates for the AD dataset. 6 omiRas http uploading error. 7 We cannot compare the runtime of mirTools 2.0 as maximum file size to upload is limited to 30 Mb. The sRNAtoolbox web application has been non-functional since 30/05/2017, which prohibited any runtime comparison (http://bioinfo2.ugr.es:8080/srnatoolbox/quick-start/)