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Table 5 Comparison between G4PromFinder and available promoter prediction programs assessed on all the samples of the positive sets

From: G4PromFinder: an algorithm for predicting transcription promoters in GC-rich bacterial genomes based on AT-rich elements and G-quadruplex motifs

 

Program

TP

FN

FP

precision

recall

F1-score

S. coelicolor A3(2)

G4PromFinder

2850

870

901

0.76

0.76

0.76

PromPredict

2075

1582

934

0.69

0.56

0.62

PePPER

1538

2768

683

0.69

0.35

0.47

bTSSfinder (E. coli)

1449

2121

974

0.59

0.40

0.48

bTSSfinder (Cyanob.)

1166

2404

1151

0.50

0.32

0.39

P. aeruginosa PA 14

G4PromFinder

1682

563

623

0.73

0.74

0.74

PromPredict

1351

813

549

0.71

0.62

0.66

PePPER

2015

1383

954

0.67

0.59

0.63

bTSSfinder (E. coli)

923

1194

497

0.65

0.43

0.52

bTSSfinder (Cyanob.)

687

1430

685

0.50

0.32

0.39