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Table 3 Long-read and hybrid correction and assembly methods

From: FMLRC: Hybrid long read error correction using an FM-index

Method

Correction

Assembly

Preassembly

Citation

Miniasm

 

Long-read

 

[6]

Canu

Long-read

Long-read

 

[5]

Sprai

Long-read

  

[7]

LoRMA

Long-read

  

[8]

hybridSPAdes

 

Hybrid

 

[15]

DBG2OLC

 

Hybrid

X

[14]

Cerulean

 

Hybrid

X

[13]

ECTools

Hybrid

 

X

[9]

LoRDEC

Hybrid

  

[4]

Jabba

Hybrid

  

[10]

CoLoRMap

Hybrid

  

[11]

Nanocorr

Hybrid

  

[12]

FMLRC

Hybrid

  

Our method

  1. All of the compared methods are shown along with their mode of error correction and assembly, each either long-read only or “hybrid” using complementary short-read data. “Preassembly” indicates whether a hybrid method requires the short read data to be preassembled using a different method
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BMC Bioinformatics

ISSN: 1471-2105

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